| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1825 |
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| Symbol | |
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| ID | 5052128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1904392 |
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| End bp | 1905963 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640471998 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001156602 |
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| Protein GI | 145590005 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.578572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCAC AGGTAGGTTT TCTTCTTAAT AAAGCGCTTG AGGCGCTTAG AAGCTCAAAT
TTAGATTCTG CTAATTTATA TCTGGAGCAG GCTATCAGAT TTCAGTCAAA TAATCCGCAT
GCTCTTAGGC TTCTTGGAGT GGTAGCCGCT CAAAGAGGTA AATATACGGA GGCTTTGGAG
CATGTCAAAA AATCACTTAA ACACCTCCCT AAAAATCCAT TGGCTTTAAG TAATCTGGGT
AATATTTATT TGGCTTTAAA GCAGTATCAA AACGCTCTTG AAGCTTTTGA CCAGTCTATT
AAGTTGGATC CAAGCTATTA CGAGGTTTGG ACTAATAAAG GTAATGTCCT CCATGAGTTA
GAGCTATATG AAGATGCTTT GATTTGTCAC GATAAATCTA TTAGCTTGCA GCCAGGATAT
CCTGAAGCTT GGACTAATAA AGGTAATTCC TTATATGAGC TTGGCCGCTA CGAATTGGCA
ATAGAGCATC ACAATAATGC ACTTACTCTT AAGCCAGATT ATTACCAGGC ATGGACCAAT
AAAGCCATTG CCCTATTTGA GCTTGGTTTA TACGAAGAGG CAATAGAGCA TTGTGATAAA
GCTCTATTGC TCAATCCTGA ATATTCTGAA GCGGAATGGA GCAAATGCTT ACCCTTACTC
TTGCAGGGTG ACTTTCAACG TGGGCTGCCG CTTTATGAGA GCAGATGGAG ATCTGGAAAA
ATTACAGCAC CCCAAGATAA AAGAAGCTTT GATAAACCTA CTTGGTTTGG GGCTGAGTCA
CTTCAGGGTA AAACCATTTT GCTTTACGGT GAACAGGGCT TAGGAGACTA TATTCAGTTT
TGCCGCTACG CTAAATTGGT TTCTGATTTA GGTGCGCGAG TAATCTTAGA GGTGCCTCCC
GCGCTGAAGA GTTTGCTTGC AAATTTGGAA GGGGTTTCAC AATTTGTTAC TAAGGATGAT
CCACTCCCGG AATTTGATTA TCAATGCCCG CTCTTGAGTT TGCCTCTCGC ATTTAAAACG
AGTATTGAGA CCATACCTAA TGTAGTCCCT TACCTCAAGC AAGAACAAAT CTCAGACAAG
TTGCAAGAGT GGACTCATAG GCTCGGTATC CAAACTAAAC CACGGGTTGG TTTAGTTTGG
AGCGGCAATC CAAGACATAA AAATGATCGC AATCGTAGTT TGCTATTGTC AGAGATGGTT
CCTCATCTAC CGGATCGATT TGAATATATT AGTTTGCAGA AAGAGGTGCG TGCCGTAGAT
CAAGCAACAC TTGAAGCTAA CCCTCAAATC CTCAACTTTG CAGCTGACAT ACACGATTTT
TCTGATACCG CTGCTTTGAT TAGGGGGTTA GATTTGGTTA TTAGTGTAGA TACAAGCGTT
GCACACTTGA GTGGTGCACT AGGAAAGAAA ACATGGATGC TATTGCCTTA TGTTCCTGAT
TGGCGCTGGA TGCTAGAGAG GGCTGATAGC CCGTGGTACC CATCAATGAC TTTGTATCGC
CAATCAGCGA AGGGCAATTG GGGTGAAGTG CTTAAAAAAA TTCATTCAGA TCTGATTGAA
ATGAATCAAT AG
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| Protein sequence | MNPQVGFLLN KALEALRSSN LDSANLYLEQ AIRFQSNNPH ALRLLGVVAA QRGKYTEALE
HVKKSLKHLP KNPLALSNLG NIYLALKQYQ NALEAFDQSI KLDPSYYEVW TNKGNVLHEL
ELYEDALICH DKSISLQPGY PEAWTNKGNS LYELGRYELA IEHHNNALTL KPDYYQAWTN
KAIALFELGL YEEAIEHCDK ALLLNPEYSE AEWSKCLPLL LQGDFQRGLP LYESRWRSGK
ITAPQDKRSF DKPTWFGAES LQGKTILLYG EQGLGDYIQF CRYAKLVSDL GARVILEVPP
ALKSLLANLE GVSQFVTKDD PLPEFDYQCP LLSLPLAFKT SIETIPNVVP YLKQEQISDK
LQEWTHRLGI QTKPRVGLVW SGNPRHKNDR NRSLLLSEMV PHLPDRFEYI SLQKEVRAVD
QATLEANPQI LNFAADIHDF SDTAALIRGL DLVISVDTSV AHLSGALGKK TWMLLPYVPD
WRWMLERADS PWYPSMTLYR QSAKGNWGEV LKKIHSDLIE MNQ
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