| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1618 |
|---|
| Symbol | fumC |
|---|
| ID | 5052375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1685766 |
|---|
| End bp | 1687223 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471791 |
|---|
| Product | fumarate hydratase |
|---|
| Protein accession | YP_001156396 |
|---|
| Protein GI | 145589799 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0114] Fumarase |
|---|
| TIGRFAM ID | [TIGR00979] fumarate hydratase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATG AAGTCATCCC AAAAATCCTC GATTTACCTA TTGGTTTAAG CGCTACTGGC
GTACGGCAAG AATTCGATAG CCTGGGTAAT GTAGATGCTC CAGCAAATCG CTATTGGGGC
GCCCAAACCG AGCGCAGCTT ACATCACTTT AATATCGGTA ATGACTTGAT GCCTAAAGAG
GTTTATCAGG CCTATGGTTA TGTCAAAAAA GCAGCCGCCA TCGTAAATAC TGAGGCCGGA
AGACTGCCAA AGTGGAAGGG CGATCTGATT CAAAAGGTGA GCGATGAAGT AATTAGCGGA
TCTTTAAATA GTGAGTTCCC GTTATATGTA TGGCAAACCG GGTCAGGTAC GCAATCGAAC
ATGAATGTGA ATGAAGTGAT TTCTAATCGC TGCATTCAAT TGGTTGGTGG CAAATTGGGT
TCTCAAGCCC CGATTCATCC GAACGATCAT GTAAACATGG GCCAGTCAAG TAACGATACC
TTCCCAACTG CGATGCATAT TGCCGCATAC AAGATGACTG TTGATAAGAC CCTTCCTGCG
CTTAAGGGAT TGCGTGATGC GATTGATAAA AAAGCAAAGC AATGGGATCA AGTAGTCAAG
ATTGGGCGCA CCCATTTAGA AGATGCAACG CCACTAACAG TCGGCCAAGA ATGGTCTGGT
TATGTTGGCG CACTCGATGA TGCGATTGCT GATATTAAGC AAGCGGTTGA TGGATTGCTC
GCTGTGGCGA TGGGCGGAAC TGCTGTAGGC ACTGGCTTGA ATGCACCCGT TGGTTTTGGT
GAGGATGTTG CCAAGGTACT TAGTAAGTTG ACTGGGTACA ACATTCAAAC TGCCCCTAAT
AAATTTACTG CACAGGGCAC TCTGGATCGC ATGGTCAGAG CCCATGCTGC ACTTAAATCA
GCGGCAGTCA GCTTATTTAA GATTGCTAAT GACCTTCGTT GGTTAGGTTC CGGCCCAAGA
ACCGGGTTGA TGGAAATTAA TTTCCCATCA AATGAACCGG GCTCATCTAT CATGCCGGGC
AAAGTGAATC CAACCCAAGC TGAGGCGATG CTGATGGTCT GTATTCAGAT TATGGGATCT
GACGTTGCCG TTCAAATGGC TGGTGCTGAA GGTAATTTTG AGCTCAATGC ATTCCGTCCT
GTCATCATCA ATAACTATCT ACACTCTGCC TTAATCATGG CGGATATGTG TGATCATTTA
AGAGAATTCA TGATTGAGGG TGCGGAATTG AATGAAGCAC AACTCAAAAA AAATATTGAA
AATTCAGTCA TGATGGTTAC TGCGCTCTCC CCAATCATTG GATATGACCA GGCCTCACTC
ATTGCTCATT ACGCGATCGA TAAAGGCTTG TCACTCAAAC AAGCGGCCCT GGCCAATGGT
GTAACAGAAG ACTTATACGA TAAGGTAGTT ATTCCTATCA ATATGACTCA TCCGGGCTCG
GCTGACGTCA AAAGCTAA
|
|---|
| Protein sequence | MNDEVIPKIL DLPIGLSATG VRQEFDSLGN VDAPANRYWG AQTERSLHHF NIGNDLMPKE
VYQAYGYVKK AAAIVNTEAG RLPKWKGDLI QKVSDEVISG SLNSEFPLYV WQTGSGTQSN
MNVNEVISNR CIQLVGGKLG SQAPIHPNDH VNMGQSSNDT FPTAMHIAAY KMTVDKTLPA
LKGLRDAIDK KAKQWDQVVK IGRTHLEDAT PLTVGQEWSG YVGALDDAIA DIKQAVDGLL
AVAMGGTAVG TGLNAPVGFG EDVAKVLSKL TGYNIQTAPN KFTAQGTLDR MVRAHAALKS
AAVSLFKIAN DLRWLGSGPR TGLMEINFPS NEPGSSIMPG KVNPTQAEAM LMVCIQIMGS
DVAVQMAGAE GNFELNAFRP VIINNYLHSA LIMADMCDHL REFMIEGAEL NEAQLKKNIE
NSVMMVTALS PIIGYDQASL IAHYAIDKGL SLKQAALANG VTEDLYDKVV IPINMTHPGS
ADVKS
|
|---|
| |