| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1575 |
|---|
| Symbol | |
|---|
| ID | 5053359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1647388 |
|---|
| End bp | 1648050 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471748 |
|---|
| Product | anti-ECFsigma factor, ChrR |
|---|
| Protein accession | YP_001156353 |
|---|
| Protein GI | 145589756 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3806] Anti-sigma factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACACA TGAATATCAA TTCAGATTAC AGCAAAAAGG TCGTGGTTAA TCATCATGAC
TTACCTTGGA TTCCGAGTCC TGAATTGGGT ATTGAAAGAC GCATGCTGGA GCGTACCGGT
GATGAGGTAG CAAAGGCTAC TTCTATCGTC TGCTATAAAC CGGGCTCTCA ATTTCCAATG
CATGCCCATG AATTTGGTGA AGAGATATTA GTTTTGGATG GGGTATTTAG TGATGAAACT
GGTGACTACC CGGCTGGCAC ATACATCATG AATCCACCAG GATCGGCACA TGCGCCTTTT
AGTAAAGATG GATGCACTCT TTTTGTAAAG CTCCGACATC TTGGTCTAGA TCAGGTCGAG
CGAGAGGTGC TCAATACAAA AACAGCCCCC TGGTATCAAG GAATGGTGCC AGGTTTAAAT
GTCATGCCAC TCATGCAGCA AGGAAGCGGG TCGACTTTAG TTCGATGGGC GCCTCAAACC
TATTTCAATC CTCACAAGCA TTACGGTGGC GAAGAAATTT TTGTGGTGGA TGGTGTTTTT
GAGGATGAAC ACGGTCGCTA CCCGGCTGGC TCATGGATTA GAAGTCCTCA TATGAGCCTA
CATCAGCCTT TTAGTAAAGA GGGCTGCACA ATTTTTGTGA AGACTGGGCA TTTACTAGAC
TAG
|
|---|
| Protein sequence | MQHMNINSDY SKKVVVNHHD LPWIPSPELG IERRMLERTG DEVAKATSIV CYKPGSQFPM
HAHEFGEEIL VLDGVFSDET GDYPAGTYIM NPPGSAHAPF SKDGCTLFVK LRHLGLDQVE
REVLNTKTAP WYQGMVPGLN VMPLMQQGSG STLVRWAPQT YFNPHKHYGG EEIFVVDGVF
EDEHGRYPAG SWIRSPHMSL HQPFSKEGCT IFVKTGHLLD
|
|---|
| |