Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1510 |
Symbol | |
ID | 5053709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1585634 |
End bp | 1586821 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640471683 |
Product | TPR repeat-containing protein |
Protein accession | YP_001156288 |
Protein GI | 145589691 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAGTT TCTTGATCGC CGCTTTCTTA TTGCTGGTCT TAGTATTCGT ATTGCTGCTC AGGCCATTTA TTTATGCTGG CAAAGATGAG GGAACCTCAC GTCGCCAAAT GAATGCTGCA ATTTATCGTG ACGAACTTGA GAAGCTTGAG ACTGAATGCA TCGCAGGTGC TATTAATGTC CAAGAGTATG AGATGAGTCA TGCGGAAATG CGCCAACGTC TTTTTCAGGA TACGACCGAG GAGGATGACC GGGCCACCAT GGGGTCTCCA GCCAAGACGG TGATTGGCAT CTGCATCTTC ATTACATTGA TTTCAGTTGG ACTGTATATT TTCTTAGGGG ATGGCGTGCG GGTTGCGCAA CAGGCATCTC AAAAGCCGGT GTCTCAAGAA GCGGTACAAA AAATGGTGGC TGAATTTGCT GCCAAGATGG AACAAGATCC AGATAATTTA AAAGGGTGGG CTATGTTGGC GCGCTCTTAT CGGATCTTAG GCCGCACAGA AGATGCTGCA AAAGCCTATG GGCGTGCTGG AACCTATCTG GATTCAGATC CAGAGCTATT GGCTGAGTAT GCCGATACCT TGGCAACCAT TGCCAATGGC AATTTTTCTG GCAAGCCCTT GCAACTAATT AATCAAGCAC TAAAGATCGA CCCGAATAAT TTCTTAGCGC TTTGGTTATC CGGAACGGCA TCGTATACCT CTGGTAATTA CAAGGCAGCA GTACAAACTT GGGAAAAACT ATCTAAACAA TTACCCCCTA ATACTGACGA AGCTCGTGCT ATTGAGGGCT CAATTGCCGA AGCGCGAACC AAAGGCGGAC TATCCGCTCC AGCAGTAGCA TCAACTGGAA AAGGGATTAG TGGCGTAGTG GAGTTATCAG CTGAACTTAA GTCTAAAGTG AAACCAGGTG ATGTTCTGAT GGTGATTGCG CGTCAACCGG GTGAGCGGAT GCCGGTAGCC GTTCTACGTG AATCTGCTGC CGAGTTTCCA ATGCGCTTTG CTTTAAATGA TGCTTTGGCC ATGAATCCCA ATCAGCCGCT TTCAAAGCTG CCTGAGGTTA CGCTTGAAGT GAGAATATCT AAAACTGGAA TGGCTAAGCC TGAGGCTGGA GATTTGCTGT CTTCTCCGCA GACTGTTAAG GTTGGCGCTA ATCAAGTGCA TTTGATTGTT AATCAAGTTC GGCAGTAG
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Protein sequence | MTSFLIAAFL LLVLVFVLLL RPFIYAGKDE GTSRRQMNAA IYRDELEKLE TECIAGAINV QEYEMSHAEM RQRLFQDTTE EDDRATMGSP AKTVIGICIF ITLISVGLYI FLGDGVRVAQ QASQKPVSQE AVQKMVAEFA AKMEQDPDNL KGWAMLARSY RILGRTEDAA KAYGRAGTYL DSDPELLAEY ADTLATIANG NFSGKPLQLI NQALKIDPNN FLALWLSGTA SYTSGNYKAA VQTWEKLSKQ LPPNTDEARA IEGSIAEART KGGLSAPAVA STGKGISGVV ELSAELKSKV KPGDVLMVIA RQPGERMPVA VLRESAAEFP MRFALNDALA MNPNQPLSKL PEVTLEVRIS KTGMAKPEAG DLLSSPQTVK VGANQVHLIV NQVRQ
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