| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1407 |
|---|
| Symbol | |
|---|
| ID | 5053196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1477086 |
|---|
| End bp | 1479362 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640471579 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_001156185 |
|---|
| Protein GI | 145589588 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.688507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCC CAAAAGAGAC AAATTCGCAC CTTTTTACTC TAGATATTGG CGGGATGACC
TGCGCCTCCT GCGTTGGCAG GGTTGAAAAA GCCTTAAATC AGACCCCGGG TGTTGAGGCT
GCCAGCGTCA ATTTAGCAAC AGAACAAGCA AAAATACGCC TACAAACGGG TGCTGAGACA
ACAATCAATT CAGTCATCGC CTCAGTTCAG AAAACGGGAT ATGACGCCAA AATAAGTACC
CCCAATGGAA AAAGCGAGAT CAAGCCCCAG CAGGCCCTTT GGGGCTCCGA CGGGCTAGGT
CGCGTTTTAC TCAGCTTTAC TCTATCTGCC CCACTTTTTT TACCGATGCT GCTAATGCCA
TTCGGCATAC ATTGGTCGCT CTCGCCGAAA TGGCAACTAT TGCTAGCAAG CCCAGTGCAA
TTCTTTTTTG GGTGGCGCTT CTATAAGGCG GGTTTTAAAT CCGTATTAGC TGGCGCAGGC
AATATGGATT TATTGGTGGC TCTTGGCACG AGTGCGGCAT ACGGCTTAAG CGTCTATCTC
ATGGTGGCTT CACCCCATGC TAATCACGAA CTCTATTTTG AGGGATCCTC AGTCATCATC
TGCATGGTGC TTCTAGGTAA GTGGCTGGAA GCAAGAGCAA AACAACAAAC CAGCGAAGCA
ATTCGTGCCT TGCAAAAACT TTGGCCAGAA CAGGCTAAGG TTCTCTTGCC CGAAGCAGTG
ATTGAAGGAA ATGCTTTCTT GGATCAATAT CGAGAATTAG CTTTGGACCA AGTTTTCGCA
AAGGATCGAA TATTAGTATT ACCTGGCGAA CGTATACCAG TTGATGGCGT AATCCTCTTT
GGCTCAAGCC ATATAGACGA ATCACTTCTT ACCGGTGAAA GTGAGCCAGT TAAAAAAACA
CTTGAGGATA AGGTCATTGG TGGATCGCTC AATGGTGAGG GGGTCATTGT CGTTGACGCC
CAAGCAGTTG GTATTGAGAG CGTTCTTTCA AAAATAATTA CCTTAGTGGA AGATGCTCAA
ACGCAGAAGG CGCCGATTCA AAAATTAGTG GATCAAGTCA GCGCAATTTT TGTGCCCAGC
GTTCTGATCA TTGCACTACT TACTGGATTG GTGAATTGGT TTTATTTAGA CTCTGCTGCA
ATTGCGATTC TCCGAGCAGT ATCTGTTCTC GTCATCGCCT GTCCTTGCGC CCTTGGATTA
GCAACGCCTG CAGCGATCAT GGCAGGAACA GGAGTGGCAG CACGCTTTGG CATCTTAATT
AAAGATCCTC AAGTGCTCGA GCAAGCGCAT CGACTCAATA TCGTAGCTTT TGATAAAACA
GGAACGCTCA CGATTGGTAA GCCTCGCTTG CTATCGTTAA TTCCGCTTTC AGAAAAATTC
AATCGGAGCG ATATTCTGGC TACGGCAGCA GGTTTGCAGT TGGGCAGCGA ACACCCCTTG
GCCAAAGCCC TATTAGATGC TGCAAAAGAA GCGGGGATAT CTCCCTTCCC ACCCACGGAG
AGCAAAGCCA TTCCAGGGGT AGGTATTACA GGCAAGACAA ACTCAGGTCC ATGGTCTAAG
CAAAACCTGA GTTTGCAAAG CGTTGCCTCT TTACATGCCG GTTTAGAAAC TGGCAATATC
GCTCAGAAAG CCCAAGCGTG TTTAGAGGCC GGGCAAACTG TCTCTGTGTT AATGAGCAAA
GACATACCCG AGACGCCAAT TGCCATCATT GCGTTTGGCG ATGAATTAAA AAGTAACGCT
CAGCAAGCCA TTAAAGCCTT GCATCAATTG CGCATCCGCA CTGTCATGCT ATCGGGCGAC
AACTCGGCCG CAGCAAATCG TGTCGGAAAT TCAATTGGTA TAGATGAGGT ATTTGGGCAA
ATCATGCCAA GCAATAAAGC AGAGATTATT CGTAAACTCC AATCTGCTGA TGCAGATCAT
TCCCGTCAAT GGGTTGCGAT GGTTGGTGAT GGCGTCAACG ATGCCCCAGC CTTAGCTGCT
GCTGATGTTG GAATGGCGAT GTCTACGGGT ACGGATGTCG CCATGCAGGC AGCAGGAATT
ACTTTAATGC GAGGTGACCC CAGTTTGGTT GCTGATGCAA TCGATATCTC TAAGCGGACT
TGGCAAAAAA TTCAGCAAAA TCTTTTCTGG GCATTTATTT TTAATGCCAC CGGGATCCCA
TTAGCAGCGC TTGGCTATCT CTCGCCCATG CTAGCTGGCA GTGCAATGGC TCTTTCTAGC
TTTTGCGTAC TCAGTAATGC CCTTTTATTA AAGCGCTGGC GCCCAGGTCA GGTCTGA
|
|---|
| Protein sequence | MSPPKETNSH LFTLDIGGMT CASCVGRVEK ALNQTPGVEA ASVNLATEQA KIRLQTGAET
TINSVIASVQ KTGYDAKIST PNGKSEIKPQ QALWGSDGLG RVLLSFTLSA PLFLPMLLMP
FGIHWSLSPK WQLLLASPVQ FFFGWRFYKA GFKSVLAGAG NMDLLVALGT SAAYGLSVYL
MVASPHANHE LYFEGSSVII CMVLLGKWLE ARAKQQTSEA IRALQKLWPE QAKVLLPEAV
IEGNAFLDQY RELALDQVFA KDRILVLPGE RIPVDGVILF GSSHIDESLL TGESEPVKKT
LEDKVIGGSL NGEGVIVVDA QAVGIESVLS KIITLVEDAQ TQKAPIQKLV DQVSAIFVPS
VLIIALLTGL VNWFYLDSAA IAILRAVSVL VIACPCALGL ATPAAIMAGT GVAARFGILI
KDPQVLEQAH RLNIVAFDKT GTLTIGKPRL LSLIPLSEKF NRSDILATAA GLQLGSEHPL
AKALLDAAKE AGISPFPPTE SKAIPGVGIT GKTNSGPWSK QNLSLQSVAS LHAGLETGNI
AQKAQACLEA GQTVSVLMSK DIPETPIAII AFGDELKSNA QQAIKALHQL RIRTVMLSGD
NSAAANRVGN SIGIDEVFGQ IMPSNKAEII RKLQSADADH SRQWVAMVGD GVNDAPALAA
ADVGMAMSTG TDVAMQAAGI TLMRGDPSLV ADAIDISKRT WQKIQQNLFW AFIFNATGIP
LAALGYLSPM LAGSAMALSS FCVLSNALLL KRWRPGQV
|
|---|
| |