Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1249 |
Symbol | |
ID | 5053622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 1314374 |
End bp | 1315114 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640471421 |
Product | integrase, catalytic region |
Protein accession | YP_001156028 |
Protein GI | 145589431 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0925898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTATC AACACCTTAG CCAAACTGAA CGATATCAGA TTTATATCCT CATGAAAGAC GGAAAAACCC AAACTCAAAT AGCCCAACTG ATGGATCGGC ATAAGTCGAC CATTAGCCGA GAGCTTGCTC GCAATACGGG GCTCAAAGGT TACCGTCCCA AGCAAGCCTG CCTGTTGGCA GAAGAACGCT CATTAGGCTG CCGTAATGCC GCCCAAATAA CAGCCGATCA ATGGAATCAG ACAGTGGATT GCCTCTTAGC TCAGTGGAGC CCCGTCCAAA TTGCCAATCA GGTTGGCATT AGTCATGAGA CCATCTACCG CCATGTCTAC GCCGATAAAG CCGCTGGCGG CAATCTTTAC CAGCAGCTGC GTTGCCAAAA AAAGCGCAAG AAACGCTATG CCAGCGGCCG TGATCGCAGA GGCCAAATAG TAGGTAGGCG GCCGATCAGT GAGCGCCCAG CGCACATTGA GACAAGATCC CAAGTCGGCC ACTGGGAAGG CGATACTGTA ATTGGAGCGG CCCACAGGCA AGCTGTTGTG ACCTTGGTTG AGCGCAAGAG TGGCTATGTC GTTTTGGCTA AGGTCAAGAA CAAGACGTCG GATTTAGTCA GTAGCGCCAT CATCACTAAA TTAAACGCCG TGACCCCACT CGTTAAAACC CTGACTTTTG ACAACGTACT AAATGCAAGA ACTTTTTCCA GCGATAGGCA AAGCCATACC GTAACTGCAA TTTGCAGTTA A
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Protein sequence | MTYQHLSQTE RYQIYILMKD GKTQTQIAQL MDRHKSTISR ELARNTGLKG YRPKQACLLA EERSLGCRNA AQITADQWNQ TVDCLLAQWS PVQIANQVGI SHETIYRHVY ADKAAGGNLY QQLRCQKKRK KRYASGRDRR GQIVGRRPIS ERPAHIETRS QVGHWEGDTV IGAAHRQAVV TLVERKSGYV VLAKVKNKTS DLVSSAIITK LNAVTPLVKT LTFDNVLNAR TFSSDRQSHT VTAICS
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