Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0868 |
Symbol | |
ID | 5053210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 861113 |
End bp | 862693 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640471026 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001155648 |
Protein GI | 145589051 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGGGAC CAGATTTTTC AAGACCATCG GTGAAGGCTG GTGATCAATA TCAGGCAACT GCGAAAACCC AATTTACAGA ATCGCTGGGC GAAAACTCTA ATCAAATTTT AGATCCCGTA GAGTGGTGGC AAAGTTTCAA TGATCCTACC CTCAATGCAT TACTCAAGCA GGCTGCGTCT CAAAACCTAA CACTCCAACA AGCGGCTATA CGAATCTATC AGTTACAGGC GCAACTTGGG GTAACTGATG CAACCATATT GCCAACCGTT GCGCTGAGTG GTTCTTATGC CAACACCCGC AATAGCAATT TGCAAGAAAT TACCAATAGC CCCGGCAACC TGGTATTTAA CAATGCCGTA GTTCAACTCA ATTGGGAATT AGATTTTTGG GGTAAAGCTA GGCGCGGCAT TGAAAGTTCT TTGAACTCCT ATATGTCTGG AGTGGCTGCT TTTTATTCGG CTGATGTTTC TATTAGTGCG GACGTCGCAA ATACCTATAT CAATATCCGT AATAACGAAG AGCTGATCGC GGTCGCCACA ACAAATCTTG CGCTGCAAAA GGAAAGCTTG CGTATTGCAG GCGCACGATT TAAGTATGGT GCGACCTCTA TGTTAGATCT TAGCCAAGCC CAGGCGCAGT ATGAGCAAAC TAAGGCGCAG ATCCCAGCTT TGATTGCGAG CCTCAAGAAA ACACAACACG CCATGAGTAT TTTATTGGGC GAACCTCCAG ATTATTATGA GAAAACCTAC GGCAATACCA AGGGTTCACT TAAGCCACCA ACCGAGTTAG GCGTGGGTAT GCCAAGGGAT TTATTGCGCC GCCGCCCAGA TGTACTACAA GCTGAATTTG CTGCGGCAGC CCAATCCTCT TTGATCGGTG TTAATAAAGC ACAACTTTTC CCCACCTTTA CCTTGGGGGG CAATTTTGGA TATGCAAACT CTAATTTTGG TGGTGGATCT ACAGGTAGTT TATTTAGCTG GGCGAATAAC TCAACTGGTA TTTCAGCCGG CCTCTCTTTA CCCTTGTTTT ATCGAGGCGC AATAGTCGAT CAGGTACGCG TACAAGATGC CGTATTCCAG CAAAGTATTT TGGCATATCA AAATCTAGTT CTTAACGCGC AAAAAGAGGT TGAGGATTCC CTTATCGCAA TTTCAACCTC TAAGAGTTCT GTGGAAGACT ATACCCGCGG GGTTATTGCT GCCAAGAGTG CCGCTGATAT GGCTTTAGAG CGATATAAAG CTGGCCAAAA TGACTACAAC ACAGTGATCG TTGCTCAGCA ATCATTATTG AGTATTCAAA ACTCTTTAGT GCAAACAAAG TCCAACGAGC TTATCGGATA TGTCGGCGCA TTTAAGGCGC TAGGGGGCGG CTGGTCTGCT GATATGACGC CGCCTAAATT ACCTGTAAGC ACTGTTGCTG AAATGACTGA ACGTACAGAT TGGGGTAATG TCCTCACAAA GACTGGTGAA CCGCTGAATG TTCAAACTGG CAAGTTGCTT CTGCCGAAAC AAGATGCTCC CGCTGAAGGG CTAGCTCCAA TTAAATCTAC AACACCGACT CAGGGAAGTG CTGCGCCATG A
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Protein sequence | MVGPDFSRPS VKAGDQYQAT AKTQFTESLG ENSNQILDPV EWWQSFNDPT LNALLKQAAS QNLTLQQAAI RIYQLQAQLG VTDATILPTV ALSGSYANTR NSNLQEITNS PGNLVFNNAV VQLNWELDFW GKARRGIESS LNSYMSGVAA FYSADVSISA DVANTYINIR NNEELIAVAT TNLALQKESL RIAGARFKYG ATSMLDLSQA QAQYEQTKAQ IPALIASLKK TQHAMSILLG EPPDYYEKTY GNTKGSLKPP TELGVGMPRD LLRRRPDVLQ AEFAAAAQSS LIGVNKAQLF PTFTLGGNFG YANSNFGGGS TGSLFSWANN STGISAGLSL PLFYRGAIVD QVRVQDAVFQ QSILAYQNLV LNAQKEVEDS LIAISTSKSS VEDYTRGVIA AKSAADMALE RYKAGQNDYN TVIVAQQSLL SIQNSLVQTK SNELIGYVGA FKALGGGWSA DMTPPKLPVS TVAEMTERTD WGNVLTKTGE PLNVQTGKLL LPKQDAPAEG LAPIKSTTPT QGSAAP
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