| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0676 |
|---|
| Symbol | |
|---|
| ID | 5053791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 673488 |
|---|
| End bp | 675686 |
|---|
| Gene Length | 2199 bp |
|---|
| Protein Length | 732 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640470831 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001155458 |
|---|
| Protein GI | 145588861 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.218893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTCA AGCAAAAGAG AATCAGCCTT TGCATCGGCA TACTTTTTGG GTCGGCCTTC
ATCAGCGCTG GAGTGCGTGC GCAAATAGCA CCACCACCTG ATTATGGGCA GAGAATTGGT
GATGTTGTTG TGAGCGCGAG TCGTTCTGGA ACTGAATTAA AGGATATGAC ACAGAATACC
TCGATTATTA CTAATGAGGA TATTCAAAAT TCTCCGAGCA TGACGATTGA TCAGGTATTA
AAAAATCAAT CGAGCGTTTT TTTGAATGAT CAACCCTATT ATGAAAAAGA TCCAACGGGC
CAAAGTTTAA ATGTACGTGG ATTGGGTAAC GCGCGTACTT TGGCTTTAAT CGATGGGTTG
CCGGCGAATG ACGCCATGTA CGGGACTATA CAGTGGAACT TGGTACCCCT TTCTGCCATT
GAAGATGTTG AGCTTATTCG TGGAGGTGTC TCCAATTTAT ACGGTAACTA TGGAATGGGT
GGCTTGGTAA ATATCACTAC TAAGCCAATT ACAGATAACA AGGGTGAAAT TTCCGCAAGT
TATGGTTCCT ATAACACTAG TACTGTTGCA GCCTCAAAAG AAGTTGCTAT TAATGAAGTG
CTGAAATTGC GCGTATCTGC CGATTACTTT AATACAGATG GTTACGTCAA TCAGCCAACC
ATCTCTCCTG CAACGACCTA TCCCAAGAAG AATGCTTACG GCCAGTCAGC TCCTCTTTTG
CCAGGTATGG GACCAGAAAG CGCCAATAGT GCTAACTATC GTTTGCAGGG TGCGTTGAAG
TTGAGCTCAG ATACTGACGT TTTTTTTAAC GTCGGTTCTC ACAATATGCA GAACCTGCCA
ACTGGCGGTT ATAACTTCGC GACCAAAACG ACCAATGAGA CAACCTTTTC AGCTGGGGCA
ACAACACGTT TAAGCGCAGT GCAAAAGGTT CAAGTAAATG CATTCTATGA AAACACAACA
TTGTGGCAAC AAAATGTAAG TAATAGCGGC ACAAGCGCTC CTTACATTAG CGCGAACTAT
AACGACCCTT ATTCAACAAC TGGTGCGTCT GCTCAATACA CCCATGACTT AAAAGACCAG
GCAATACAAC AGTTTGTTGT GAGCGTTGAT GGCAGGCAGG TAGCTGCGCA AAACTTAACT
AATTCCTTTA GTTCTGCCGC TGGTTATACC AATGGAGTAG TGACTTCATC TGACTATGCA
AAGGGCCAGC AAGAGTTTTA TGGAGTAATG GCGCAAATGA AAGCAAAAAC AGATGTGATC
CCATTGCAAG CAACGCTTTC ACTTAGGGAA GATCAGTGGC AAAGCCAAAC CCCAACCTAT
TGGATCGCTG GTGCAAATGG AAAGCCAAGC TATACCAATG TACCAAACCA AACTGTGAAT
AAGTTCAGCC CAAATTTAGG ATTACTTTTG CAGGCCACTA AAGAATTGGA TTTTAGAGGC
GCCGCGTATC AAGGATTTCA TGCCCCTGGC TTGAATAACA CTCTTCGTAC TTATGGCAAC
TCTACAAGTG TGAGCCTTGC AAATCCTTTG CTTACTCCAG AGAATATGAC AGGCTATGAA
CTCGGTACTG ACTACCGTTG GAACGCAGGT TTTGTGCAGA TAACAGGTTT TAGTGCTCAG
GTTAAAAACG CAGTCTATGC CCCTAATGTT TCACAAGCAC AAGCTTATTC TGCCGGTTGT
CCTTTATCAG TCTGTACTGG AGCGAATGGT CAAACCTATA CTTTGTACGG TAATAATCAA
AATCTTCAGA GCCAAGGCTT GGAAGTTCAA GCACACCATG ACATAAATGC TCAATGGCTT
GTAGATGGAA CTTATACCCA TACCAATACA GTACTTACAT GGATAGGATC GGGTGTTAGT
TCAACGCTAA ATCCGATTGG CTCCCAGGTG GGTGGAGTCC CGCAAAATAT GGGCTATGCA
GGTCTCACAT ATATGCCGGT TCCTTATGCT AATTTGACTG CCAACATTCG TTATATTGGA
AATTCTTGGT TAGATGGGGC ACATACTTTA CCGGTTCCTT CCTATGCGGT AGTTGGTTTA
AAGGCAAATC TTCAACTCAC TCCTCAAGCT TCTTTATTTG CCTCTATTGT GAATATGTTT
AATCGCACCT ATATTACTTA CGGGACAGGC ACTAGCCAAG GCAGTTATAT TGCTGGGCAG
CCTCAATCGA TTACCGTTGG CGCGCGTATC ATCTTCTAA
|
|---|
| Protein sequence | MLFKQKRISL CIGILFGSAF ISAGVRAQIA PPPDYGQRIG DVVVSASRSG TELKDMTQNT
SIITNEDIQN SPSMTIDQVL KNQSSVFLND QPYYEKDPTG QSLNVRGLGN ARTLALIDGL
PANDAMYGTI QWNLVPLSAI EDVELIRGGV SNLYGNYGMG GLVNITTKPI TDNKGEISAS
YGSYNTSTVA ASKEVAINEV LKLRVSADYF NTDGYVNQPT ISPATTYPKK NAYGQSAPLL
PGMGPESANS ANYRLQGALK LSSDTDVFFN VGSHNMQNLP TGGYNFATKT TNETTFSAGA
TTRLSAVQKV QVNAFYENTT LWQQNVSNSG TSAPYISANY NDPYSTTGAS AQYTHDLKDQ
AIQQFVVSVD GRQVAAQNLT NSFSSAAGYT NGVVTSSDYA KGQQEFYGVM AQMKAKTDVI
PLQATLSLRE DQWQSQTPTY WIAGANGKPS YTNVPNQTVN KFSPNLGLLL QATKELDFRG
AAYQGFHAPG LNNTLRTYGN STSVSLANPL LTPENMTGYE LGTDYRWNAG FVQITGFSAQ
VKNAVYAPNV SQAQAYSAGC PLSVCTGANG QTYTLYGNNQ NLQSQGLEVQ AHHDINAQWL
VDGTYTHTNT VLTWIGSGVS STLNPIGSQV GGVPQNMGYA GLTYMPVPYA NLTANIRYIG
NSWLDGAHTL PVPSYAVVGL KANLQLTPQA SLFASIVNMF NRTYITYGTG TSQGSYIAGQ
PQSITVGARI IF
|
|---|
| |