Gene Pnuc_0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0539 
Symbol 
ID5052250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp529470 
End bp530348 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content47% 
IMG OID640470693 
ProductCitryl-CoA lyase 
Protein accessionYP_001155323 
Protein GI145588726 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.730056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAATA TCAATCGACC ACGCCGCTCT GTACTTTATA TGCCAGGCGT CAACACGCGG 
GCCCTTGAAA AAGCAAAAAC ATTGCCTGCT GACTCTCTCA TTCTTGATCT GGAAGATGCC
GTAGCTCCAG ACTCAAAAAG CATTGCCCGA GAGAATATCC GAACCGCACT CGAATCTGGC
TTTGGTCACC GGGAAGCTGT TGTCAGAATA AACGGGCTCA ATACTCCATG GGGGTTAGAT
GATCTAAAGG CCTTCGCTAA TACCAAAGCC GATGCCATCG TCTTACCTAA AGTGGAATCT
GCAAAAAAAA TCCAAGAGGT AGCCAAGCTC TTGTCTGAGT TGAATGCGCC AAAAGATCTC
ACAATTTGGG CCATGATTGA AACACCTAAG GCCATTTTTA AATTAGAGGA AATTGCTGGC
GCTCATCCAA GACTAGAGGC CCTAGTCTTA GGCACCTCTG ATCTAGTTAA AGATTTGCAT
GCTCGCCACA CCTTAGATAG GACAGAAACA CTCACCGCTC TCTCACTTTC TGTTTTAGCG
GCTAGAGCCT ACGGTCTATG CGTTCTTGAT GGCGTTCACC TCATCTTAGA TGATGAGGCC
GGCCTAAAGC AGTCCTGCGT CCAAGGCAGG GACATGGGAT TTGACGGTAA AACCTTGATA
CACCCCAGCC AAATAGCTTT GGCAAATGAA CTATTTGGGC CATCAGCCCA GGAAATCGAA
GAGGCTCAAC AAAAGATTGC AGCCTATGAA TCCGCCATAT CTACAGGGGC GGGAATTGCC
GTTCTCAATG GCAAGCTGAT TGAAGAATTG CATATTCAGG ATGCAAAAAG GTTGCTTGCT
TTGGCTGCGG CCATTCAATC CTTTGGCACC AATAACTAA
 
Protein sequence
MININRPRRS VLYMPGVNTR ALEKAKTLPA DSLILDLEDA VAPDSKSIAR ENIRTALESG 
FGHREAVVRI NGLNTPWGLD DLKAFANTKA DAIVLPKVES AKKIQEVAKL LSELNAPKDL
TIWAMIETPK AIFKLEEIAG AHPRLEALVL GTSDLVKDLH ARHTLDRTET LTALSLSVLA
ARAYGLCVLD GVHLILDDEA GLKQSCVQGR DMGFDGKTLI HPSQIALANE LFGPSAQEIE
EAQQKIAAYE SAISTGAGIA VLNGKLIEEL HIQDAKRLLA LAAAIQSFGT NN