| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0539 |
|---|
| Symbol | |
|---|
| ID | 5052250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 529470 |
|---|
| End bp | 530348 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470693 |
|---|
| Product | Citryl-CoA lyase |
|---|
| Protein accession | YP_001155323 |
|---|
| Protein GI | 145588726 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2301] Citrate lyase beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.730056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATA TCAATCGACC ACGCCGCTCT GTACTTTATA TGCCAGGCGT CAACACGCGG
GCCCTTGAAA AAGCAAAAAC ATTGCCTGCT GACTCTCTCA TTCTTGATCT GGAAGATGCC
GTAGCTCCAG ACTCAAAAAG CATTGCCCGA GAGAATATCC GAACCGCACT CGAATCTGGC
TTTGGTCACC GGGAAGCTGT TGTCAGAATA AACGGGCTCA ATACTCCATG GGGGTTAGAT
GATCTAAAGG CCTTCGCTAA TACCAAAGCC GATGCCATCG TCTTACCTAA AGTGGAATCT
GCAAAAAAAA TCCAAGAGGT AGCCAAGCTC TTGTCTGAGT TGAATGCGCC AAAAGATCTC
ACAATTTGGG CCATGATTGA AACACCTAAG GCCATTTTTA AATTAGAGGA AATTGCTGGC
GCTCATCCAA GACTAGAGGC CCTAGTCTTA GGCACCTCTG ATCTAGTTAA AGATTTGCAT
GCTCGCCACA CCTTAGATAG GACAGAAACA CTCACCGCTC TCTCACTTTC TGTTTTAGCG
GCTAGAGCCT ACGGTCTATG CGTTCTTGAT GGCGTTCACC TCATCTTAGA TGATGAGGCC
GGCCTAAAGC AGTCCTGCGT CCAAGGCAGG GACATGGGAT TTGACGGTAA AACCTTGATA
CACCCCAGCC AAATAGCTTT GGCAAATGAA CTATTTGGGC CATCAGCCCA GGAAATCGAA
GAGGCTCAAC AAAAGATTGC AGCCTATGAA TCCGCCATAT CTACAGGGGC GGGAATTGCC
GTTCTCAATG GCAAGCTGAT TGAAGAATTG CATATTCAGG ATGCAAAAAG GTTGCTTGCT
TTGGCTGCGG CCATTCAATC CTTTGGCACC AATAACTAA
|
|---|
| Protein sequence | MININRPRRS VLYMPGVNTR ALEKAKTLPA DSLILDLEDA VAPDSKSIAR ENIRTALESG
FGHREAVVRI NGLNTPWGLD DLKAFANTKA DAIVLPKVES AKKIQEVAKL LSELNAPKDL
TIWAMIETPK AIFKLEEIAG AHPRLEALVL GTSDLVKDLH ARHTLDRTET LTALSLSVLA
ARAYGLCVLD GVHLILDDEA GLKQSCVQGR DMGFDGKTLI HPSQIALANE LFGPSAQEIE
EAQQKIAAYE SAISTGAGIA VLNGKLIEEL HIQDAKRLLA LAAAIQSFGT NN
|
|---|
| |