| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0518 |
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| Symbol | |
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| ID | 5052348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 510115 |
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| End bp | 510681 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640470672 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_001155302 |
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| Protein GI | 145588705 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.541026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTACAC CTTCCCTAGA TAACTTGATA GAGCTAGGCG CCATTTCTGA GGCGCAAGGT
TTGCAGGGGC AAGTAAAGGT TAGACCTCAC TCGCCCGACC CTGTAGCTCT ACTATCTTCT
AAAGTTGTTT GGCTTTCACT GTTACCGCGT CGTTCTGCGG GGGCTTTGTC ATCGACTGAA
GAAGCCACTC TCACACAGTA CAAAGTAAAA AGCGCAAAAA TGCATAGCGG TAATGTCGTG
CTTACTTTAG ATGGTGTATC TGATCGCGAT CAAGCGCTAG CCTTAAAAGG TGCACGTATT
CTTCTTGATA GAGATGCATT TCCTAAGGCA GAAAGCGACT CTTACTACTG GGTAGATCTC
ATTGGCTGCA AAGCAAAAAA TTTGCAAGAT GAGATATTGG GTGATGTGAT TGATGTGACT
GAGAACGGTG CGCATGGCGT TATTGCTATT GGCGACATTT CGACTAAAAC AATTCAATAC
CTTGTTCCTT TTGTGAAGGA AGTTGTTCGT AATGTGGATC TACCAAACAA GTTATTAACA
CTGGATTGGC AATCGGATTG GGTGTAA
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| Protein sequence | MSTPSLDNLI ELGAISEAQG LQGQVKVRPH SPDPVALLSS KVVWLSLLPR RSAGALSSTE
EATLTQYKVK SAKMHSGNVV LTLDGVSDRD QALALKGARI LLDRDAFPKA ESDSYYWVDL
IGCKAKNLQD EILGDVIDVT ENGAHGVIAI GDISTKTIQY LVPFVKEVVR NVDLPNKLLT
LDWQSDWV
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