| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0467 |
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| Symbol | |
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| ID | 5053614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 457558 |
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| End bp | 459570 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640470620 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001155251 |
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| Protein GI | 145588654 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCAAA ACGTCATTGA CAACGAAACG CAAGAAAAAT TAGAAGCCTT TATCAAGCAG
GAGGAAGGAG ACTCTAATGA TTACAAAGGG CTCCTAGCAA AGTTCATCAC TCTTGTCGCT
GTAGGCATGT CTTTATTCCA CCTCTATGCT GCATATTCAA TCGTCCCAAC CCAAGAGCTC
AGGGTGATTC ACGTTGCCCT AGTGCTGTTC TTAGTGTTTT TAAGTTTTCC TATTGCTGCA
CGCTTTAAAA ATAGACTCAT GTGGTGGGAT GTGATTTTTG CGCTTATCTC CGTTTATGTT
GCGTATTACA TATTGAGTGG TGGCGATGAT TTCATGGATA GAAACACCGC GCCAAATTCA
ACGGATGTTG TGATTGGAAT TGGTTTAATC CTCCTCATTC TTGAAGGTGT CAGAAGAACA
AATGGTTTGA TACTGGTGAG CGTTACCGTC CTATTCTTGC TCTATGCTCT TTTTGGCAAC
TACTTACCTG CACCTTGGAC ACATAAAGGT TACGATTTAG ATCGTTTAGT CGGTTATATG
TATATGACCC TAGAGGGGAT CTATGGCACA GCGGTTGATG TATCAGCAAC CCTGATTATT
CTTTTCACTA TTTTTGGCGC CTTCTTACAG TTCACAGGCG CCGGAAAATT CTTCATCGAC
TTTTCATTTG CAGCTATGGG TGGGAAATCA TCCGGAGTTG GCAGAACCAT TGTGATGTCT
TCGTTCTTGC TGGGAGGCCC ATCTGGATCA GGTGTTGCTA CGACGGTTAC CGTAGGCTCA
GTTGCGGCGC CAATGCTAGA TAAAGTCGGT TACGAGAAGA ATGCAGCGGG CGGCCTTTTG
GCTGCGGGAG GATTGGGCGC CATCATTTCT CCTCCAGTGC TGGGTGCTGC CGCCTTCCTA
ATTGCTGATT TTTTAAAGAT TTCGTATTTA GATGTATTGC TTATGGCAAC CATTCCTACC
ATCCTTTTTT ACCTAGGCTT ATTTGTGATG GTGGAAATTG ATGTACGCAA ATACGGTATG
AAGAACATTC ATTTTGAATC TACCGAGAGT GCATGGCAAT TAACTAAAAA ATATTGGTTC
CACTTCTTCT CATTAATCTC CATTGTGGTG TTCATGCTGA TGGGCTTCTC GCCAGTTATG
TCGGTATTTT GGGCAACGGT TGTATCAGCT CTATCCAGTA TGTTGCGCGA AGATACGGCG
ATTATTCCTT GGACGTGGTT TAAAGGCAAA GAACCCATTC TGTCGGGCCT CTATAACTCC
AACCTCACTA AGTCCCTGGC TGCAGGATCT ACTGGGGTGT TAGCGATTGC TGCAACTTGC
GCAGGTGCGG GCTTAATTGT TGGTACCGTT ACGCTAACAG GTCTGGGCCT GAAATTTAGC
TCTATTGTGA TTCAATATGC TGGCGGCTCA CTCTTGCTCA CCACTATCTT TACAGCGCTG
GTAGTTTGGG TGGTCGGGCT TGCGGTACCA GTCACTGCGT CTTACATCAT TTGCGCTGTG
ATTGCTGCGC CAGCACTGAT CAACTTAGGA GTGCCTGCAT TTGCAGCACA CATGTTCATT
TTTTACTACG CTGTTCTATC TGAGGTCTCC CCTCCTACCG CACTTTCACC ATTTGCAGCA
GCGGCCATTT GTAAGGGCAA CCCTTACAAA ACAACTTTGC AAACCTGGAA ATATGTCGCG
CCCGCTATTT TGGTGCCCTT TATGTTTGTT CTGGATAAAT CTGGAGTGAG CTTATTGTTA
ATGGGATCTA CTGAAGCACT TGAGCAGGCA GACTGGATGC AAATTGCTTG GATTTCATTT
ACCGCAGTAG TGGGAATCAT TTGTTTGGCA GGTGGTCTAC AAGGTTGGTT TATTGAAAAA
ACCAAAATTT TTGAGCGCAT CATCATGGTT GCTTCCGGGG TAGCTCTGGC ATACCCCTCT
ACTGAGGCTG ACTTAGTTGG ATTTGTTGGC TTTGCTTTGG TTTTGGTTAC TCAAACCATC
ACCCACTTCA AGCTCAATCC CCGATCCTCT TAA
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| Protein sequence | MNQNVIDNET QEKLEAFIKQ EEGDSNDYKG LLAKFITLVA VGMSLFHLYA AYSIVPTQEL
RVIHVALVLF LVFLSFPIAA RFKNRLMWWD VIFALISVYV AYYILSGGDD FMDRNTAPNS
TDVVIGIGLI LLILEGVRRT NGLILVSVTV LFLLYALFGN YLPAPWTHKG YDLDRLVGYM
YMTLEGIYGT AVDVSATLII LFTIFGAFLQ FTGAGKFFID FSFAAMGGKS SGVGRTIVMS
SFLLGGPSGS GVATTVTVGS VAAPMLDKVG YEKNAAGGLL AAGGLGAIIS PPVLGAAAFL
IADFLKISYL DVLLMATIPT ILFYLGLFVM VEIDVRKYGM KNIHFESTES AWQLTKKYWF
HFFSLISIVV FMLMGFSPVM SVFWATVVSA LSSMLREDTA IIPWTWFKGK EPILSGLYNS
NLTKSLAAGS TGVLAIAATC AGAGLIVGTV TLTGLGLKFS SIVIQYAGGS LLLTTIFTAL
VVWVVGLAVP VTASYIICAV IAAPALINLG VPAFAAHMFI FYYAVLSEVS PPTALSPFAA
AAICKGNPYK TTLQTWKYVA PAILVPFMFV LDKSGVSLLL MGSTEALEQA DWMQIAWISF
TAVVGIICLA GGLQGWFIEK TKIFERIIMV ASGVALAYPS TEADLVGFVG FALVLVTQTI
THFKLNPRSS
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