| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0311 |
|---|
| Symbol | |
|---|
| ID | 5053733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 301792 |
|---|
| End bp | 303048 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640470463 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001155096 |
|---|
| Protein GI | 145588499 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.673346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTAG TCATGCTTGT TTCCGTAAGA ATTTCTCTTC CCCACTTGGG TGTCGATAGG
TTCGGAGTCT GGATGACTAT TGCAAGTTTG GTAGGCCTAT TAAATTTTCT TGATTTTGGC
ATTGGCAATG CCTTGACTAA CAGGGTGGCT TTATATGCTG CTCCAGCAAA TGCAAAGCAT
TTGAGAAAAT GTGTTGGTGC GAGCTTATTC ATCTTAGGCG TTGCCTCGGT AATCATCCTT
TTTGTTTTAT ACCCTTTTGC ATACTATCTT CCATGGCAAA CGATACTAAA ACTGCCAACT
CAAGCGTTGT ATGAGGAGAC GCAGTCGGCC ATGAAGCTCT TTGCCATTCT TTTTGCCTGT
AATATTTTTA CGAGCGGAAT TAATAAAGTT TTTTTTGGAT TGCAACAGGG TTATTGGGCC
AATATTGCCA GTGCAGTTGG TTCGGTGCTG TCTTTAGTTT TGATATGGCT GGCGGTACGC
TCGGAGGGGG GTATCTCGAC TTTATTGTTG GCCAGCATGA CGGGAGGGTT GATTGCTAGC
CTTGGCTTAT TAGTTCTTTT GGTTATCCGC AATCAAGTGG AATTTGTTGC GCCAGCCGAA
AGTTTTCGAT TGGAGTCTCA TTACTTATTG AGGGTTGGTG GAAGCTTCTT TTTTTTGCAA
ATTGGCGGCA TTGTAGTTTT TGGGGCAGAT AGTCTTATTG TTGCTAACGC ATTAGGCGTA
GCGGTTGTAG CTATCTATAG CGTATTACAG AGATTATTTC AATTTGTGAC TCAACCATTC
TCGGTTATCA ATTCTGGGTT ATGGCCAGCT TATGCTAATG CTCATGCACA TGACGATAAA
GCATTTATTG CATCGACCCT GAGGCGGTCT ATGATGATTA CAGTCGGTGG GGGGCTCATG
CTAAGTGGAG TGCTGATTGT GCTTGGGAAG CCTATTATTG CCTGGTGGAC CCATGGGGAA
ATCGCTGTTT CATACGCATT GCTTATCTCA TTTGGCTTAT GGGCTGCTTG CGATTCTAGC
GCTAATGCTT TTTCAATGTT CTTGAATGGC GTGTCCCTAA TGAGGCCTCA GATCAAGGGT
CTTGCGGCTT TAATATTGAT TGGTATGCCC CTGAAGATAT ATTTATTAAA TGAATATGGT
TTAGTGGCAA TGATGCTCGG ATTTACAATG TTCTTTGTAG CAAATATTTT ATTTTGGATT
GGGATCGTAT ACAGAGAGAC CATTACCAGT TTTTTTCATG AAAAGAGATC CATATGA
|
|---|
| Protein sequence | MMLVMLVSVR ISLPHLGVDR FGVWMTIASL VGLLNFLDFG IGNALTNRVA LYAAPANAKH
LRKCVGASLF ILGVASVIIL FVLYPFAYYL PWQTILKLPT QALYEETQSA MKLFAILFAC
NIFTSGINKV FFGLQQGYWA NIASAVGSVL SLVLIWLAVR SEGGISTLLL ASMTGGLIAS
LGLLVLLVIR NQVEFVAPAE SFRLESHYLL RVGGSFFFLQ IGGIVVFGAD SLIVANALGV
AVVAIYSVLQ RLFQFVTQPF SVINSGLWPA YANAHAHDDK AFIASTLRRS MMITVGGGLM
LSGVLIVLGK PIIAWWTHGE IAVSYALLIS FGLWAACDSS ANAFSMFLNG VSLMRPQIKG
LAALILIGMP LKIYLLNEYG LVAMMLGFTM FFVANILFWI GIVYRETITS FFHEKRSI
|
|---|
| |