Gene Pnuc_0215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0215 
Symbol 
ID5053951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp212993 
End bp215023 
Gene Length2031 bp 
Protein Length676 aa 
Translation table11 
GC content47% 
IMG OID640470367 
Productribonuclease II 
Protein accessionYP_001155000 
Protein GI145588403 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCTTT TATATGAAGA GGGTGGCGAT ATCAAAATTG CCACTGTGCA GTCATCAACC 
GGAACTGGTG ACGCAGAATC TTGGCAGGCA ACTAGTCTTT CTGGAAAGAA GATTAAGATC
AAGGCCAAAG AGGTTTGGCT GCGCTTTGAA AAGCCTGAAG CACAGGCGGT TATGGATGAA
GCCCAGGTTT TATCTAAAGA CATCGACTTG CAGTTACTTT GGGATTGCGC TCCTGACGAG
GAGTTTGGTT TAGTGGATGT TTCGCTGGAA TATTTTGGCG CGCAAGCTAG CATCCCTCAA
CAAGTTGCTT TAGCCATTGC CTTGCAGGGA GCCCCTGTCT TTTTCCGGCG TAAGGGCCGG
GGGCGATTTC AAAGGGCCCC TCTTGAGCAG CTCCAGGCAG GTTTGGCTGC TCTTGAGCGC
AAACAAAAAG AGTTAGAGCA ACAGGCTATC TGGCAGAAAG AAATGGTTGC CGGAAACTTT
CCAGAAACAT TGCGGTCTTC AGCGCAGCAA TTACTTTTTT CACCAGATAA AAATACATTT
GCTTATAAAG CGCTTATCGC CGCTTGTACT GAGACAGGAG AGTCTCCACC ACAACTGATG
ATTCGGTGTG GTGCGATTGA TTCACCTTTG GCATATCACC AAGGGATGTT CCTCAAGGCA
CATTTTCCAA ATGGTTCGAC TCATCAGAAT ATTGGGGTGG ATGAATCAAC TTATGCGCAA
GCGATTGCCG CGCTTCCAGA GGCAGATGTA AAGGCATTCT CCATTGACGA TTCTGGAACC
ACTGAAATTG ATGATGCCCT ATCAGTAAGT ACTCTAGCTG CTGGTGGACA TCGTATTGGT
ATTCATATTG CCGCTCCTGG ATTAGCGATC GCTAAAGATG ACCCGCTAGA TCAAGTGGCC
CGCAATCGCA TGTCTACGGT GTACTTCCCT GGTGACAAAA TTACGATGCT CCCCGATGTG
GTCATCGAGC AATTTTCATT GGATGAGGGC TCAGCAAGGC CTGCTTTGTC GATCTATGTA
GATATAGATG AGGATGGTGT TGTTCAACGC GAGACATTAC AAATGCGAGC AGAGCGGGTG
CCTATGGCAG CCAATTTGCG TCTAGAAGAT TTAGAGCATC TGGTGAGCGA AGAGACTTTG
TTTGATGAAT CGGAGAATTA TCCTTACCGA AAAGAATTAG GAATACTGTG GCAGGCTGCC
AAACTGTTAC ATGCGGGCCG TCAAGAAAAA CGTGTGGCTA ATGGTCTGCG TGCTGAGCAA
TTGGGAGTGA TTGATCCCAA TGCCTTAGCA AGAGACTTTT ATTTTCAGAT TCAAGACCAA
GATGGCATTC AGCATGTTGA GATTGTGCCC CGGCAACGCG GATCTATTTT GGATACGATT
GTTGCGGAGT GGATGATTTT TTGTAACAGC GCTTCTGGGC AGTTATTGGC AGATCATGGT
TTGCCAGGCT TATTTAGAAC CCAGAAAGGC TGGGGACCAT TACGCACCCG TATGCAAACC
ACCCCAGGAC CCCACGAGGG ATTGGGCTTG GACTATTACG CCTGGTGCAC TTCGCCATTG
CGCCGCTATT CCGACTTAGT TAATCAATGG CAGTTAATTG CCTTAGCAAA GCACGGTGTG
ACTGCCAAGA TGGTCGCGCC ATTTCCTCCG CGTGATGCAA CACTGATGGG GATTGCTGCA
GATTTCGAGT CATGCTATCA AGCCTATGGG GAATATCAAG ATCGCCTAGA AAAATATTGG
TGTTTGCGTT GGATAGCCCA AGATGATGAC TCGAAGGGTG TGTTTGTACG TCACCTCAAA
GAGGGTATGT CTCGCCTAGA GTTGGTGCCA TTGCATCTGC CTGTTCCTGA GTTAGCAAGT
CATCCACGTA TGACACGCGC ACAAGTCTTG ATTTCGGATG TAGATTTATT GCAATTGAGT
GCGGCAGTTA GAGTGCTTGA GATTGAAGTT AAGCAAGATG CACCTGAAAA AACAGTGGAA
GTAACTCCAG AAGCCTCAGA GAATTCCGAA GAAGATGCTG GCACAGATTA A
 
Protein sequence
MNLLYEEGGD IKIATVQSST GTGDAESWQA TSLSGKKIKI KAKEVWLRFE KPEAQAVMDE 
AQVLSKDIDL QLLWDCAPDE EFGLVDVSLE YFGAQASIPQ QVALAIALQG APVFFRRKGR
GRFQRAPLEQ LQAGLAALER KQKELEQQAI WQKEMVAGNF PETLRSSAQQ LLFSPDKNTF
AYKALIAACT ETGESPPQLM IRCGAIDSPL AYHQGMFLKA HFPNGSTHQN IGVDESTYAQ
AIAALPEADV KAFSIDDSGT TEIDDALSVS TLAAGGHRIG IHIAAPGLAI AKDDPLDQVA
RNRMSTVYFP GDKITMLPDV VIEQFSLDEG SARPALSIYV DIDEDGVVQR ETLQMRAERV
PMAANLRLED LEHLVSEETL FDESENYPYR KELGILWQAA KLLHAGRQEK RVANGLRAEQ
LGVIDPNALA RDFYFQIQDQ DGIQHVEIVP RQRGSILDTI VAEWMIFCNS ASGQLLADHG
LPGLFRTQKG WGPLRTRMQT TPGPHEGLGL DYYAWCTSPL RRYSDLVNQW QLIALAKHGV
TAKMVAPFPP RDATLMGIAA DFESCYQAYG EYQDRLEKYW CLRWIAQDDD SKGVFVRHLK
EGMSRLELVP LHLPVPELAS HPRMTRAQVL ISDVDLLQLS AAVRVLEIEV KQDAPEKTVE
VTPEASENSE EDAGTD