Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0122 |
Symbol | |
ID | 5051975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 116170 |
End bp | 118152 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640470273 |
Product | TPR repeat-containing protein |
Protein accession | YP_001154907 |
Protein GI | 145588310 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.142603 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGAGG CTGTGGCTAC ACAAACCTTA TTTGCAAATG CCCTGACTTT TGCACAATCT GAGCAATACC AGGCTGCCAT AGATGTGTTG GCAAAACTTC TCAAGGCAGA GCCAAATCAT GAAGGTGCAC AGCAATTAAT TGGGGCTATC TCAAATGCTT TACCCAACAA AAATCAATCA ATTACCTTAT TAAAAGAATT TATTGAGATT AGCAGCTCTT CACCAGTACT TTTATATGCA TTGGGATCAC TACATTTAGA GCTTGGGAAC TACCCCGAGG CAATTTTGCA CCTGAATCAC GCCTTGGACC TAGACCCAAA TAGTTTTGAG TCACTCCATG ATATCGGCGC TGCCTACGCA CTCTCTGGCA ATAAGGTAGC AGCCTTAGAA AGTCTTCTCA AGGCCGCAAA AATCAATAGT CAGTCAGCAG ATCTTTTCTA TAACTTAGGC AGACTATACG ATGACCAGTT TGAATATGGG GCAGCAATTA CCGCCTATAG AAAATCAGTT GAGATTAACT CTAGTTTTAC GGAAGCATGG ATTAATTTAG GCATTGATTT AGGTGTCTAT AAAAAATATT CAGAATCTTT GAGGTGCCTA GACATAGCAT ATGCACAAAA TCCAAATGTG GATTTTTTAT ATGGCGACTG CCTGTATTTA CATATGCGCA TGTGCTTATG GGAAAAATTA AATCTAGCAA AAGACAATAT TGAAAAGGGG GTGATGAAAG GTACGAGAAT CATTCCCCCA TTCCCCCTAT CTGCATTAAT TGACTCTCCC ACCCTGAATT TAGAGGCGGC CAAAATTTAT ACGCAGGCAC GCTATCCAAA AAATTCTTCG TTAGGACCCA TCAGTAATTC TTCTAATAAA AAAATAAAGG TTGGGTATTT TTCTCCAGAC TTTCATGAGC ACCCTGTTTC ATATTTGATG GCAGAAGTTT TTGAGCTGCA CGATCGTAGT CAATTTGAAA TTTATGGCTT TTCATTTGGC AAGCCAAACA ACGACGCCAT GCGACAAAGA GTGGAGAGCT CTTTTGACCA CTTCCTTGAT GTCGCGCAGA ATACCCCCCA AGAAATAGCA TCTATGTCGA GAGAAATGGG CATCGATATA GCTATCGATT TATGTGGATT TACTGAAAAT GCTAGAACCG AAATATTTGC CATGAGAGCA GCGCCTATCC AAGCTAGCTA TATCGGATTT TTAGGAAGTA TGGGGGCAGA ATATATAGAC TACTTAATTG CGGATGAAGT CATCGTTCCA CCTCAGTTAA GGCAGTTTTA TAGCGAAAAG ATAATTTATC TTCCAAGTTA TCAAGCAAAT GATTCGAAGC GAGCGCCAAG TGAAAAATAC TTCGCTAAAT CTGATTTTGG AATCCAAGAG GATCAATTCG TATTTTGTAA TCTGAATAAT GCCTTCAAGA TCACCCAAGC TATCTTTGAT AGCTGGTTAA GAATACTAAA GATGACCCCT AATTCAGTCA TGCTTTTGTA TGCTGAAAAT GCGGAAGCTA CTAAGAATCT ACTGGAGTAT GCAAGCAAAA ATGGGGTTGC CCCTCAAAGG TTTGTTTTTG CCGAGCGTTT GACTAGGGCA GACTATCTTG CTCGCTACAA AATAACTGAT TTATTCCTAG ACACTACTCC ATACAATGCT GGCACTACAG CAAGCGATGC CCTATGGATG GACATACCTG TAATTACTCT GCAGGGTGAA TCCTTTCCAA GTCGAGTGGC CTCTAGCCTA CTCACACATC TGGATTTACC AGAATTAATT CATCAGTCAA TGGCTGGCTA TGAAACACAA GCAGTAGAAC TCGCCACCTA TCCAGAAAAG TATATAGACC TAAAAAATAA ATTAATTGCC AATAAAAATA GTACGCGCCT ATTTAACTCA AACTTGTTTA TGCATAGTTA TGAAAGTGCT CTCAAAGAAG CAAATACTCT TTTTTGCGCT AACTTACCCC TCAAGGATAT TATTAGCCTT TAG
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Protein sequence | MKEAVATQTL FANALTFAQS EQYQAAIDVL AKLLKAEPNH EGAQQLIGAI SNALPNKNQS ITLLKEFIEI SSSSPVLLYA LGSLHLELGN YPEAILHLNH ALDLDPNSFE SLHDIGAAYA LSGNKVAALE SLLKAAKINS QSADLFYNLG RLYDDQFEYG AAITAYRKSV EINSSFTEAW INLGIDLGVY KKYSESLRCL DIAYAQNPNV DFLYGDCLYL HMRMCLWEKL NLAKDNIEKG VMKGTRIIPP FPLSALIDSP TLNLEAAKIY TQARYPKNSS LGPISNSSNK KIKVGYFSPD FHEHPVSYLM AEVFELHDRS QFEIYGFSFG KPNNDAMRQR VESSFDHFLD VAQNTPQEIA SMSREMGIDI AIDLCGFTEN ARTEIFAMRA APIQASYIGF LGSMGAEYID YLIADEVIVP PQLRQFYSEK IIYLPSYQAN DSKRAPSEKY FAKSDFGIQE DQFVFCNLNN AFKITQAIFD SWLRILKMTP NSVMLLYAEN AEATKNLLEY ASKNGVAPQR FVFAERLTRA DYLARYKITD LFLDTTPYNA GTTASDALWM DIPVITLQGE SFPSRVASSL LTHLDLPELI HQSMAGYETQ AVELATYPEK YIDLKNKLIA NKNSTRLFNS NLFMHSYESA LKEANTLFCA NLPLKDIISL
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