| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1378 |
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| Symbol | |
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| ID | 5054423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum arsenaticum DSM 13514 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009376 |
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| Strand | - |
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| Start bp | 1239486 |
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| End bp | 1240754 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640468923 |
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| Product | Pre-mRNA processing ribonucleoprotein, binding region |
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| Protein accession | YP_001153592 |
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| Protein GI | 145591590 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00034062 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0041241 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAAAA TACATATCGC AACGGACGTT CTCGGCTTCT TCGCGGTGGA CGAGGGGGGC
AACCTCGTAG ACAAGGAACT ATTCGAGAAG AAGCCTGAAC TTATTGCGGA GAGGCTTATC
GAGCTGGAGA AATCCAACCC GGTGCCGGAG CTTGTGAAGC TTGTGGAGAG GCTAAGGGGC
AGGGCGGAGA AGATTGTGCT AGAAGACCCG GAGCTGGCGC GGAAGCTTGT ATCCACGGTG
AAGTGGGCCG AGGTGGTGGG CGAGAGCCCC TCCCCCGTAT TGGTGGCGTT TAGGCAGAAT
TTCCAGAGGC ATCTCTCCAG CATTGGCCTG AGCTGGGAGG AGTACACAAA GTTCCTCTTC
GAGATAAGCG ATCTGGTAAC GAGGTTAAAG CTGAGGCAGG CTGTGGCCAA GCGCGACTTG
TACATCGCCC AGGCCATAAG CGCGCTTGAC GACGTGGACA AGATCATGAA CCTAATCGCG
TCGAGGATAA GGGAGTGGTA CGGCCTCCAC TTCCCCGAAC TTGAGGAGTT GGTGAGAGAC
AACAAGGAGT ACGTCTCTAT CGTATACCAC ATAGGCCATA GGTCTAAGAT TACGGAAGAC
GCCTTGAAGA AGGTGGCCCC CGAGGCGCCG GAGGACAGAG TCAAGAAGAT AGTGGAGGCG
GCGAAGAGGA GCGTCGGCGC AGAGATGTCA GACTGGGATC TCGACCAGCT CAAGACGTAT
GCTGACGTAT TCCTGAAGCT CAACGCTTAC AGAGACCAGC TGGCTGCGTA CATCGACGAG
GCCATGAAGG AGGTGGCCCC CAACATCAGG GAGCTGGTGG GGCCTCTGCT GGGCGCGAGG
CTGATAAAGC TCGCCGGCGG CTTGACGAGG ATGGCGTTTC TCCCCGCCTC GACGATACAG
GTCCTCGGCG CAGAGAAGGC GCTGTTCAGG GCGTTGAGGA CAGGAGGAAA GCCTCCAAAA
CACGGCGTCA TATTCCAGTA TCCGGACATC TTCCGCTCTC CCCGCTGGCA GAGGGGGAAA
ATCGCCAGGG CCCTTGCGGC TAAGCTGGCG ATTGCTGCCA AGGCAGATGC CTTCACTGGG
AATTTCATAG CGCCGAGGCT AAAAGAGGAG TTGTTGAAGC GTATACAGGA AATAAAGACG
TTATATGCAA AGCCGCCTCC CAAAGCCCCC GCACAGCCAA GCGCCAAGAC GCCGCCTCCT
CCACCGCCGT CACCGCCAAG AGGGGGCGAG AGGAGGCCTC CTCCGAGGAG GGAAAGGGGA
AGGAGGTAA
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| Protein sequence | MAKIHIATDV LGFFAVDEGG NLVDKELFEK KPELIAERLI ELEKSNPVPE LVKLVERLRG
RAEKIVLEDP ELARKLVSTV KWAEVVGESP SPVLVAFRQN FQRHLSSIGL SWEEYTKFLF
EISDLVTRLK LRQAVAKRDL YIAQAISALD DVDKIMNLIA SRIREWYGLH FPELEELVRD
NKEYVSIVYH IGHRSKITED ALKKVAPEAP EDRVKKIVEA AKRSVGAEMS DWDLDQLKTY
ADVFLKLNAY RDQLAAYIDE AMKEVAPNIR ELVGPLLGAR LIKLAGGLTR MAFLPASTIQ
VLGAEKALFR ALRTGGKPPK HGVIFQYPDI FRSPRWQRGK IARALAAKLA IAAKADAFTG
NFIAPRLKEE LLKRIQEIKT LYAKPPPKAP AQPSAKTPPP PPPSPPRGGE RRPPPRRERG
RR
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