| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1005 |
|---|
| Symbol | |
|---|
| ID | 5055185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | + |
|---|
| Start bp | 897315 |
|---|
| End bp | 898013 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640468563 |
|---|
| Product | sugar fermentation stimulation protein |
|---|
| Protein accession | YP_001153237 |
|---|
| Protein GI | 145591235 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1489] DNA-binding protein, stimulates sugar fermentation |
|---|
| TIGRFAM ID | [TIGR00230] sugar fermentation stimulation protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.383313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTTCC CCTTAGAGGA GCCTGACGCC TATGGAGATT TCGTGAGGAG GCTTAACAGA
TTTGCCGGTA TCGCCGTGAT AGGGGGCAGG GAGGTCAAGA TCCACATACA CGACCCGGGT
CGTCTGCAGG AGTTGCTCTT CCCGGGTGTC AAGATCTGGG CGAGGAGGAG GGTTGGGGGC
AAGACTGAGT ACTACCTAAC CGCTGTGGAG CTGGAGGAGG AGCTTGTGCT GGTTGACTCC
TCTCTTCATA ACAAAGTCGC CGCGTGGCTC GTGGAGTCAG GTGTGATTTT TCAGGGTTAC
AGAGTGGCTA AGAAGGAGCC AGCATTCGGC AAGGGGCGGT TTGACTTGTT GCTGGAGTCG
CCTACTGGGG GCCGCGCGCT CGTCGAAGTC AAGGGCGTCA CGCTCGAGGC GGGCAGGCGT
GCTCTATTTC CAGATGCCCC CACTGCGAGG GGGGCTCGGC ACATGGAGGA ACTCGCGCGC
GCAACGGCAG AGGGCTACGA GGCGTATGTG CTCTTTCTAG TTTTCAGGAA GAGGGCGGCA
TCCTTCTCGC CTAACTGGGA TATGGATAGG AAATTCGCCG AGAGTCTCCT CCGTGCGCAC
AACGCTGGCG TGGGAGTACG CGCGGTGAAG TTGGAGATGT TTAAATGGGG GCTGAGATAC
GTGGGGGAGC TACCGGTGGA CTTGACGCCC CCTTTCTAA
|
|---|
| Protein sequence | MYFPLEEPDA YGDFVRRLNR FAGIAVIGGR EVKIHIHDPG RLQELLFPGV KIWARRRVGG
KTEYYLTAVE LEEELVLVDS SLHNKVAAWL VESGVIFQGY RVAKKEPAFG KGRFDLLLES
PTGGRALVEV KGVTLEAGRR ALFPDAPTAR GARHMEELAR ATAEGYEAYV LFLVFRKRAA
SFSPNWDMDR KFAESLLRAH NAGVGVRAVK LEMFKWGLRY VGELPVDLTP PF
|
|---|
| |