| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_34816 |
|---|
| Symbol | |
|---|
| ID | 5003528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009363 |
|---|
| Strand | - |
|---|
| Start bp | 632429 |
|---|
| End bp | 634366 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | |
|---|
| GC content | 60% |
|---|
| IMG OID | 640418949 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001419862 |
|---|
| Protein GI | 145350966 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0611822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCT TCGCGCGAGA CGCGGCGGAG AGCGCGAAGG CGGATGCGTT ATTGCGAGGG
GCGTGGGAAC TGATCGATGA GTTTGGGTTA GAGAGTGGGG AGGTGTGCGA TGCGACGTAC
GTGAGCGAGT TGATGTTTGA AGACGACGCG AACGCGCCCG CGGGCGCGAG GGAATTCGCC
GCGCATCGTC TGTTGAGCTC GCCGATGGGG GGTATTTATT TCAAACTGAA GGCGAAAGGG
ACGTACGAAT CGCGCGCGGC GGATCAAATA GACGCGCTTA AGCGTAAAGC AGAAGCTGAA
TCTCGCGCAG CAAAGGTGGA AGAAGCGTTT TTGGATGAGA TCAAAGCCGC CGCCGCGGCG
CCCGCGGGAG TAAAGCCCGA TCGCGACGCG CTATGGAGAC CGAGCGACGA GGATAACGAC
GCGCGCGTTC GTCGATTAGA GGCGCTGGAA GCGTACGCGC TCGGCGAGAA ATTCCATTCC
GCCGGAGAGA AGGCGATGGC GGACGATTTA CTCGGCAAAC TAGGGTTCAC GCGCTCATCC
GAGGGCGCGT TGAAGACGTT GATTTCAACC GGCACGTGGA GCCGACACGA AAATTTATCC
GTGCGCAAGT ATGGGGTGCA GATTGATTTC CCCGAAGGTA CCGCAAAAGC GTGCGCGGAG
GTGTTGTCTA ATGAACCAGT CGACGCCGAC GCCGCGTCGC GCGTGGATTT AACTTACCTA
AGAGCGTACG CCATCGACGA CGCTGAAACG GTTGAGGTGG ACGACGCGGT GAGCGCCGAG
GCGCTGGGCG ACGACGGACA GATTCGAGTG TGGGTGCACA TCGCCGATCC GACGCGATGG
ATCCCTCTCG GGTCGCCGCT GGACGCCATC GCGCGTCAGC GCGCGACGAC GCTGTATTAC
CCCACGGAGA TCGTCCCGAT GTTTCCTCTG GAAATCGCCG CGGGTCCGAT GTCTTTGGGC
TCGAGGTCAG ACGTCGCGAG CGAGGCGATG ACGGTTCGCG CCGACATCGA TCGCGAGGGT
AACATCATGG ATTTTGAAAT TATGCCGAGT TTCGTAAAGC TCGATCGACG TTGGACGTAC
GATGAAGTCG ACGTCGAACT CGACAGCGCG ACGTGCGATG AAGGACTTCG ATTGTTGTAC
AAGGTGGCGA GCGCGCGAGA CGAGCGTCGC GCCGAAGACG GTTCGGTGAC CATCATTCTT
CCCGAGAATT CAGTCAACGT GCGAGGAGCC ACCGCGCGCG GAGGCGACGG CGACGTCGCT
ATAACAATGT CAAAAATCAA TGGTCACACG CCGGCGCGCA TGCTCGTCTC CGAGCTCATG
GTTCTCGTCG GCGACGTCGT CGCGCGCTTT GGCGTGAGAG AAAATATCCC GCTTCCTTTC
CGAGGTCAGG GCGAGCCGCG CTTGATGTCC GACGACGAGT GGGATGGAAT CCCCGAAGGG
ATATGTCAGG ATATGGCTAT GCGTTCGTGC ATGACGTCAT CGACGAGTGG CGCTACGCCC
CGTCCGCACT CCGGTCTCGG CTTGAGCGCG TACGTGCAGT TTACGTCGCC GATTCGCAGG
TACGCCGACG TCTTGGCGCA TCATCAAATC AAGGCGTACT TACGAGGCGA ACCGCTTCCA
TTCGACGAAC AATCGATGGA AAACGTCATC GAAGACGTCG GTACCACCGT TGGTGGCGCG
ATTCGCTCTC AACGCGAGAC GTCAAAGTAT TGGGCTTCGG CGTACTTTGA CGCCCAGCCC
GCGGACGCGC GTTGGACGGC GACGGTGGTC AAGTTTATTC GCGGCGACGA TTTAGTTTTG
GTCATCTTCG ACGACCTTGG CTACGAAACT GTGGTGAAGC TCGATCGCGG CGCGGTGTTG
GGGGAGACGC TGACGCTAAA GTTTGTCGAC GCCGACCCGC ACGCCGGTTC GACAAATTTT
GCTCGCGTCG AGGCGTAG
|
|---|
| Protein sequence | MERFARDAAE SAKADALLRG AWELIDEFGL ESGEVCDATY VSELMFEDDA NAPAGAREFA
AHRLLSSPMG GIYFKLKAKG TYESRAADQI DALKRKAEAE SRAAKVEEAF LDEIKAAAAA
PAGVKPDRDA LWRPSDEDND ARVRRLEALE AYALGEKFHS AGEKAMADDL LGKLGFTRSS
EGALKTLIST GTWSRHENLS VRKYGVQIDF PEGTAKACAE VLSNEPVDAD AASRVDLTYL
RAYAIDDAET VEVDDAVSAE ALGDDGQIRV WVHIADPTRW IPLGSPLDAI ARQRATTLYY
PTEIVPMFPL EIAAGPMSLG SRSDVASEAM TVRADIDREG NIMDFEIMPS FVKLDRRWTY
DEVDVELDSA TCDEGLRLLY KVASARDERR AEDGSVTIIL PENSVNVRGA TARGGDGDVA
ITMSKINGHT PARMLVSELM VLVGDVVARF GVRENIPLPF RGQGEPRLMS DDEWDGIPEG
ICQDMAMRSC MTSSTSGATP RPHSGLGLSA YVQFTSPIRR YADVLAHHQI KAYLRGEPLP
FDEQSMENVI EDVGTTVGGA IRSQRETSKY WASAYFDAQP ADARWTATVV KFIRGDDLVL
VIFDDLGYET VVKLDRGAVL GETLTLKFVD ADPHAGSTNF ARVEA
|
|---|
| |