| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_33000 |
|---|
| Symbol | |
|---|
| ID | 5003406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009362 |
|---|
| Strand | - |
|---|
| Start bp | 227874 |
|---|
| End bp | 231338 |
|---|
| Gene Length | 3465 bp |
|---|
| Protein Length | 1154 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | 640418827 |
|---|
| Product | RND family transporter: Dispatched segment polarity protein (cholesterol release) |
|---|
| Protein accession | XP_001419317 |
|---|
| Protein GI | 145349803 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.69508 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGCG ACGGCCCCAC ACGCGTCTCG TGGCCCGTTA AAGTTTTCAC TCGAACCGTG
GTCAAACAGC CTTGGGCGGC GCTCGCGTGC GCGTTGGGTC TCATCGCGCT CGCAGCGTAC
GCTATCGCGA CGAAAGACGT CGCGCTGAGC ATAGACACGT CATTGGAATC GTATCGTGCG
CGAGGGACGC CGAGGACGAC GAGGGCGCTG GCGGTGGGGC TCGCGAAGCG CTGGAGCGCG
GCGACGCCGT TGGATTTGCA ATCGAGGCGA CTGGCGCGGC GGAGATTATT GGTGACGAAT
GCGTCGTCGA GCGATGGACT CGCACCACCA CCGCTGCCGC CACCGCTGCC GCCACCGCTG
CCACCATCGC CGCCGCCACC ACCGCCGTTC CTTGGTTTGC CGCCAACGAG AAGGCTCGCG
TCGAGTCTCG ATCGGCGGAT TTTGGGATTG AACGCGAAAT CGGGCGTCGA CGGCGGCACG
GGGGCGAATG AATTTCACGT CATCGTCAGT CGAGTGGATC GCAAGGGTGA CACACCGAGT
GATATCGCGA ACGCACTTCG CCAAGTGTGC GTTTTAAAGC ATAACATCGA GCACGCGTGG
GGCTACGAGG ACACGTGCGA GGAGGATCGA TACGGGGACG GATGCGCGGC GGCGTTTAGT
ATTTTTGACA TCGAGAATAT GTATCGATTG GTGGGTTTAT GGGACGTCTT CGAAGGCGCA
CAGAAGCTTG GGCAAGGGAC GTTTGCAGAA GTATCGGCGC GCTTGGATTT TATTCGCGAT
CAATGCGGAT ATCGAATGTT TACGCGCGAG ATCGTCGAGG CGGCGCATCG ATCGATGTGC
GACGCCGTCG CCGCGTGTCA CGAATATCCT TGCGACGTCA CGAGTAGCGC GCGATGCATG
ATCGGAGAGT TTAAGATTGG TATTTGCGAT TTTATAGAGC ACGTGGATCC TACGGTCGGG
GAGATAATCG CCGTCGCGAA GATGAATAAA AACCTCGACG CGGTGGCGTG CCGTGAAATC
GATGCGGTTG CTGTGTGGGA TACAATGCTC GGGATAGAAG TGATTTTACG CTGGTCCAGC
TCGTGGGACG CAATCGAGGC TTTCGGGGCA CCGTTCGGAA TATTATTAAA CGATGCTTTC
TTGCCAAACA TGGCGCAAGA GCGAGGCGAG CCGCGCAGGA TGGCCATCGT GTTTCGGCTT
TCATACAGTG ATCAGTCGAC GATTTGGGTT AAGAATGTGG CTCGGCACGT CATCGAACAT
TTCAACTCTG ACGTCTCATC TGTTTCCACG GGAACCTTCG CTTCCTGGCG GCACATTAAT
GCGTACAACT CGATGCTGGA TGATCGTCTC GCGAAGGATT GCGTATTCGC CGTGGGCTCG
CTGTGTGTGA CGGTGGCGTT CATCGCTTTG CACACCCGCT CGCTCTCACT CGCCATTTGC
AGCATGATTA GTATAATCGG TGCGACTCTT CTCACGCATG CGACTTACTA TGAAGTGTAC
AGACGAGAAT GGTTCGGCAT AATTCATATT GCGGGAATTT TCCTATCTAT CGGCATCGGC
GCCGACGACG TCTTCGTGAT TTACGATCAT TGGCAGGCGA GCGCGAACAA CGTCGAGGAA
AAAGAGAGCC TGGACGCAAC TTTAGAAGAA CGCATGCAAT GGACCCTACG TCACTCGGCA
TTTAGTATAA GTATCACATC TTTCACTACG GCGGCGGCTT TTGCAAGCAG CATTCCGAGC
TCCATTCCTC CCGTTCGGCT ATTTGGCACA TTTATGGCGA CGCAGATTAT TTTTCTCCTA
CTCGTCAGTA TCGTCGTGAC ATCTTCGGTG TTGATTTTGA ATGAAAAGTG GAAGCGCATC
GCGGTCTCGA GAAACCGCGT GATGCCTTCT CAAGAGGAAG TAGTCGACGT AAATCCGACT
GTGGTGGCTC GTCGTGGATC TGCGCAACGG AGAGCGACAA TCGATTTTGG TGACTTTCCT
GAAACTCTCA GTCGTGTCAT CCATAGGCGC ATGGCATCCG CACCATTAGA TCCGGTTGCG
TTAACACTAC GTCCATCATT TGCCGTCGAA GGACGCCCTT TGATAGATGA AGCATCGTCC
GCATCGACGT CTCCAGCGCT CTCACCTCGG AGGACGTCGC GTCGTCGCCG GGATTTACTT
GCTGCGACGT TTACTCGCCT CGTGTATTGG AAGTGGACGC TTAATGTGGT ATTTGTTGCC
ATGATTGTCG GCGCCGTGCT TCTTGGGCTC AACATCGTGA AGCAAACCGG CGACGAGTCA
CTGTCTCTGT GGCCAAAAGG CCACGTTATC CACGATTACA CGCTCGCCGC GCAGAGTTTT
AACTCGTCTC GCTACGAAGA AAGCGTCCTC GTCCAGTTCA CATTCGGCCT CGATGCCGCG
CGCTCGAGCG TGTCCGCTAT ATCTGATAAG TCTCTGTCGT ACTCTGGCGT TCCAGTGTGG
CTCGTTGAGC CGAATGCGTC GTATGATTTT TCCGACGAAG ACTCTCAGAT ATGGTTGCTA
GAATTCTGTG CCGAGCTTAG ATCGATGCGC GATCGCATCG TGTCTCCAAC GACGGTCAAT
TGTTGGATAT ATGATCTTGA TGTATGGCTC AAAGACGGAG GATTACTCGG TGCACACATC
GACGGTTTAC CCATCGCTCG ACAAGACTTT CGTTACGCCG TTCGAACGTT CGCCAATCAC
GTGAATACGT ACGGCTTACT GCGCTTCATA CGAAATAGAG ACGACTGCGA CAAATATCGC
CTGGGCGATG ATCTCTGTGT CGCATACTCA GCAATCACGG TACCGACGTC GGCGCGCAGG
GTGTCTACGG CTGATGAAAT CAGAAAAGCG CACGATTTCT GGGAAACGTG GTTTGCGGCA
AAGATCTCGA CTGGGCCTCC GGAGACGCGC GGCGCGTTTC AATCAAGCGA TACGTGGGTT
CTCGCAGATA CGGTTGACGA ACTTAAATCA GCCGCTTCGT TGACCGTCGT ATATTCGTTA
GTTTTGGCGT TTATGGTTCT ATTTCTTTGC ACCTTGAGCG TCAAAATCGC CGCCGCAGCG
ACGTTTTGCA TCGCCTCCGT CGTAGTATAC TTTGTCGCCT TCATGGCGCT TCGCGGATGG
CGTCTGGGCA TCATCGAATC CGTGTGCGTG CAGATTATTG TCGGTCTCAG CATCGATTAT
ATCAGCCACA TCGCTGTCGC GTACGTATCA ACGCATAACC AACCCATGAC AAAGGACGAG
CGTTCACTCT CGGCGCTCCG CATCGTCGGA GGCGCCATCA CCGCCGGCTG GTTCTCATCC
ATCGCCGCCG CGGCATGCTT GCTCGGATGT ACCATCGTCT TCTTCACAAA GTTCGCAACC
TTCATCGTCG TCACGCTCAC CGCGAGCTTC ATCCACGCCG TCGTCGTGTT GCCCGTCGTG
TTGGCCGCGC TCGGCCCGGC GTACGTCCAG CCGCCGCCGC GATGA
|
|---|
| Protein sequence | MPRDGPTRVS WPVKVFTRTV VKQPWAALAC ALGLIALAAY AIATKDVALS IDTSLESYRA
RGTPRTTRAL AVGLAKRWSA ATPLDLQSRR LARRRLLVTN ASSSDGLAPP PLPPPLPPPL
PPSPPPPPPF LGLPPTRRLA SSLDRRILGL NAKSGVDGGT GANEFHVIVS RVDRKGDTPS
DIANALRQVC VLKHNIEHAW GYEDTCEEDR YGDGCAAAFS IFDIENMYRL VGLWDVFEGA
QKLGQGTFAE VSARLDFIRD QCGYRMFTRE IVEAAHRSMC DAVAACHEYP CDVTSSARCM
IGEFKIGICD FIEHVDPTVG EIIAVAKMNK NLDAVACREI DAVAVWDTML GIEVILRWSS
SWDAIEAFGA PFGILLNDAF LPNMAQERGE PRRMAIVFRL SYSDQSTIWV KNVARHVIEH
FNSDVSSVST GTFASWRHIN AYNSMLDDRL AKDCVFAVGS LCVTVAFIAL HTRSLSLAIC
SMISIIGATL LTHATYYEVY RREWFGIIHI AGIFLSIGIG ADDVFVIYDH WQASANNVEE
KESLDATLEE RMQWTLRHSA FSISITSFTT AAAFASSIPS SIPPVRLFGT FMATQIIFLL
LVSIVVTSSV LILNEKWKRI AVSRNRVMPS QEEVVDVNPT VVARRGSAQR RATIDFGDFP
ETLSRVIHRR MASAPLDPVA LTLRPSFAVE GRPLIDEASS ASTSPALSPR RTSRRRRDLL
AATFTRLVYW KWTLNVVFVA MIVGAVLLGL NIVKQTGDES LSLWPKGHVI HDYTLAAQSF
NSSRYEESVL VQFTFGLDAA RSSVSAISDK SLSYSGVPVW LVEPNASYDF SDEDSQIWLL
EFCAELRSMR DRIVSPTTVN CWIYDLDVWL KDGGLLGAHI DGLPIARQDF RYAVRTFANH
VNTYGLLRFI RNRDDCDKYR LGDDLCVAYS AITVPTSARR VSTADEIRKA HDFWETWFAA
KISTGPPETR GAFQSSDTWV LADTVDELKS AASLTVVYSL VLAFMVLFLC TLSVKIAAAA
TFCIASVVVY FVAFMALRGW RLGIIESVCV QIIVGLSIDY ISHIAVAYVS THNQPMTKDE
RSLSALRIVG GAITAGWFSS IAAAACLLGC TIVFFTKFAT FIVVTLTASF IHAVVVLPVV
LAALGPAYVQ PPPR
|
|---|
| |