| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_16250 |
|---|
| Symbol | CHR3508 |
|---|
| ID | 5003000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009361 |
|---|
| Strand | + |
|---|
| Start bp | 645999 |
|---|
| End bp | 649466 |
|---|
| Gene Length | 3468 bp |
|---|
| Protein Length | 1156 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | 640418421 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001418764 |
|---|
| Protein GI | 145348662 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0231462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCCG CCGAACGCGG CGCGATCGCG TCGATGCCTC ACGACGATGC GCCGACGACG
ACCGCCGGAA CGACGGAGCT GTTCGGCAAG ATTGACGGCG AGACCGTGCG GTTCCTCGTC
CAGAGCTCGT TCGCGGGCGA TCAGCTCGAT GAGTTGAAGC GGCAAATAGC GATGTTGCGC
AGGCTGCGCG CGGGCGATCG GTTCGTGCTG CCGGGTCAAG GGACGCCGCG CGCGACGAAG
GAGCGCGTTT TTGGCTTGTT GGACTTGGGG TGCGGGGCGG AGTTGCGCCT GAGCGATGCG
ACGAAGACGT ACTTCACGCA CGCCGAGTGG ATGTACTCGT ATAGAGAATT ACCGCTGTTT
TCTCAACTTT CGGATGAAAG GTCGACCGAT GCGGCCAAGG CGAAGTTTGC GAGGAAGCGC
GACGGTGACG GTCGAGCCGA GTTGAATCTA GCCGACGTGA ATAGATTGGC GACGAAACCG
GTGGAGATTT TAGAACGCGA GGGGAAGAGG TTGTTGGAAC ACGCACATTT GCGAGAAATC
GAACGGCTGC GAGAGGAAGC AGATGCTTTG AATGAGATGG ACGACGACGG ACAACGGCTC
GCCTTGGAAA ATCGCATCAA ACAGCTTGAG TTGGTGAGGG TTCAACAGCG AGTAAGAAAT
GAGCTCGTGT TTGCGCAACA GGAGATAATG CAGATGCCGG AGCGAGCGTA TAAGAAGATG
GTCAAGGACA ACATCAAAAT ACTCGCTGAG AAGAAGAAGA AGGCTGAGAA GAAGGAGAAG
CAAGAACAGA CAGCGTTCTA TCGCAGTGTG CTAGCAATGC GTAAACGTAT CAACGAAGAG
TCGAACAACG CTCGCGATGA GCGCTTAGCA AGAAACAAAG CTGTGCTGAA AATGCACGAA
AAGTTGAACC GCGAATTCAT GCGAAAGGCT CGCGATGAAA ATTCAGAACG TTTGTTGCGC
CTGGAAGCGT TAAAGGCGAA CGATTTAGCC GCATATCGCG AGTTACTCGC AGAGGCGAGA
GGTCGCGAGA CTGATATGAC AGCTGAAGGC GAGGGTGACA AATATGAAGC TTTGACTTCG
TTCTTAAACG CAACTGAATC GTACTTAACC AAGCTTGGAG GGAAAATTGC CGCGGTGAAG
ATTGAGCAAG CGCGTTCAGA AGCCGCCGCC GCCGCCGCAT CAGAGGCCGA GGCCAAAGGT
CTTACTGAGG AAGAAGTCAA AGTCGTCGCG GAAGAAGCGG CAAACAGTGC AGCTATTGAT
CATGGTGAAG CCATTTTAGA CGGTGCTGCG GATGGTGGAG ACACGAAGGA GCGATACTAT
GCCATGGCGC ATAGTACGCA AGAAATCATC ACACATCAAC CGCGCATGTT GACCTTTGGA
AAACTTCGCG ATTATCAGCT CGTGTCCCTG CAATGGATGA TTTCGCTGTA TAACAATAAG
TTAAATGGTA TTTTAGCTGA TGAAATGGGT CTCGGGAAAA CAGTTCAGGT GTGTGCGTTG
ATTGCTTACT TGTTCGAAAG CAAGCAAAAC TTTGGACCGC ATCTCATCAT CGTACCAAAC
GCCGTGATTG TGAACTGGAA AGCCGAAATC AGGCGATGGT TGCCGAAACT ATCCACCGTG
TTTTACGTCG GCTCAAAGGA TGCGCGCGCT AAAATTTTCC AGCAACAAGT TTTGCAGCTC
AAGTTCAACG TCCTCGTCAC TTCTTACGAG TTCATCATGC GAGATCGATC CAAGTTGAGC
AAAGTGGCAT GGAAGTACAT CATCATCGAC GAAGCGCATC GGCTGAAGGA TCGCGAAGGT
CGCTTGAGTC GGGATTTGGA TAAATTTAGA GCGCAACGTC GCTTACTTCT CACCGGTACT
CCGTTACAAA ACGAGTTGTC CGAGCTTTGG TCTCTCCTAA ACTTGCTCTT ACCTGAGGTG
TTCGACTCGT CAAAAGTGTT TCAAGAATGG TTTGGAGGGA ACTCGAAGGT TAGTAACGAC
GCCGACGGCG AAGATTGGAT CGAGAGAGAA AAGAAGGTTA TCGTCATTAG TCGTTTGCAT
CAGATTCTTG AGCCTTTCAT GCTGAGACGA TTAGTGCAAG ATGTTGAGAG CAAGCTTCCG
CCTCGCGTCA CCGTCATCGT CCACTGTCCG TTCAGCGCCT TTCAGTCAGC TTGTTACGAC
TGGATTCGTA AAACGGCCTC CATTCGCGTT GAACCAGGAA CTAGAATAGG ACTGGCGGCA
CAGCAAAACT TCCGTGGGTA CTTGCCACTC CAAAACAGGG CGATGGAACT CCGCAAGCTC
TGCAATCATC CGTCGCTGAG TTACCCTCCT GAAAAGGGTG GAGATTTCCG AGGTCCGAAC
CTTGTGCGCG CGGGCGGTAA GTTTTGGATA TTGGATCGAT TGCTCGTGAA GTTGCAACGC
TCAGGGCATC GAGTGTTGTT ATTCTGTACT ATGACAAAGC TCCTTGACTT GTTGGAAAAC
TACTTACAGT GGAGATGGAC CACTCCGGAT GGTCAAGACT TGAAGTATTG TCGCATCGAT
GGAAACACTT CATTGGAGCA GCGCGAGATT GCTATTAACG ATTTCAACGC ACCTCACAGC
GATAAGTTTA TCTTCTTGCT CTCTATCAGA GCCGCTGGTC GTGGTTTGAA TCTTCAGACG
GCGGATACCG TGGTAGTGTA CGATCCAGAT CCAAACCCGA AAAATGAAGA ACAAGCCATC
GCACGAGCGC ATCGCATCGG CCAAACGCGA GAAGTGCGTG TGATCCACTT TGAAGCAGTC
GACGATGACA TCGTGCAGAA AAAGAAGGGA AGCAAGAAGG AAGAAGTTGG TTGGGGCGGT
CCAAATAGAA GCTACTGCGA ATCCCTCGAG TCGTCCGTTC GCAACGTCAT TCAAAAACAA
AAGATTGAAA TGGCTGCTGA AATTGTTGAT GCCGGTAGAT TTGATGGTCA GACGACGCAT
GCCGAACGAC GGGAAACTCT CGAAAACCTT CTTCAGCAGC AAGCAAATGG CACGCGAACA
GGCGTAAGCG TGCCTCCGTT AAAAGAACTT AACGGCAAGA TCGCTCGCTC TCAAGAAGAA
TGGGACTTGT TCAACCGTTT GGACGAAGAG CTCGATTGGC CAGGCGCTTT GCTGAGCTCG
GCAGAGTGTC CGTCGTGGAT CAAGTACACG CAAGACGAAA TCGATCAAGC TGTTTTTGCA
AACACTAAAG TTGGACAGTC GAGTGTTACG CAGTTCAACG AGAACATGGG TAGAGGCGCT
CGGTCGACAA ACAACTTGAA CGCGAGCGGA TCGGCGGTGT GGACCCACGC CGACAGACAA
GAGGGTGACT TTATCGATAG AACTGGCATA GCCGACGACG ATGGCGATGA AGATGAAGAG
AGTGATGACG TAGCCGTACG GGAGGACTCC ATAGAAGATA TTGGAGATAT TGATATCGAT
GATATCGAAG ACGCTGAAGA TGACGACGAC ACCACGACTT TGAATACG
|
|---|
| Protein sequence | MDAAERGAIA SMPHDDAPTT TAGTTELFGK IDGETVRFLV QSSFAGDQLD ELKRQIAMLR
RLRAGDRFVL PGQGTPRATK ERVFGLLDLG CGAELRLSDA TKTYFTHAEW MYSYRELPLF
SQLSDERSTD AAKAKFARKR DGDGRAELNL ADVNRLATKP VEILEREGKR LLEHAHLREI
ERLREEADAL NEMDDDGQRL ALENRIKQLE LVRVQQRVRN ELVFAQQEIM QMPERAYKKM
VKDNIKILAE KKKKAEKKEK QEQTAFYRSV LAMRKRINEE SNNARDERLA RNKAVLKMHE
KLNREFMRKA RDENSERLLR LEALKANDLA AYRELLAEAR GRETDMTAEG EGDKYEALTS
FLNATESYLT KLGGKIAAVK IEQARSEAAA AAASEAEAKG LTEEEVKVVA EEAANSAAID
HGEAILDGAA DGGDTKERYY AMAHSTQEII THQPRMLTFG KLRDYQLVSL QWMISLYNNK
LNGILADEMG LGKTVQVCAL IAYLFESKQN FGPHLIIVPN AVIVNWKAEI RRWLPKLSTV
FYVGSKDARA KIFQQQVLQL KFNVLVTSYE FIMRDRSKLS KVAWKYIIID EAHRLKDREG
RLSRDLDKFR AQRRLLLTGT PLQNELSELW SLLNLLLPEV FDSSKVFQEW FGGNSKVSND
ADGEDWIERE KKVIVISRLH QILEPFMLRR LVQDVESKLP PRVTVIVHCP FSAFQSACYD
WIRKTASIRV EPGTRIGLAA QQNFRGYLPL QNRAMELRKL CNHPSLSYPP EKGGDFRGPN
LVRAGGKFWI LDRLLVKLQR SGHRVLLFCT MTKLLDLLEN YLQWRWTTPD GQDLKYCRID
GNTSLEQREI AINDFNAPHS DKFIFLLSIR AAGRGLNLQT ADTVVVYDPD PNPKNEEQAI
ARAHRIGQTR EVRVIHFEAV DDDIVQKKKG SKKEEVGWGG PNRSYCESLE SSVRNVIQKQ
KIEMAAEIVD AGRFDGQTTH AERRETLENL LQQQANGTRT GVSVPPLKEL NGKIARSQEE
WDLFNRLDEE LDWPGALLSS AECPSWIKYT QDEIDQAVFA NTKVGQSSVT QFNENMGRGA
RSTNNLNASG SAVWTHADRQ EGDFIDRTGI ADDDGDEDEE SDDVAVREDS IEDIGDIDID
DIEDAEDDDD TTTLNT
|
|---|
| |