| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mflv_3961 |
|---|
| Symbol | dapF |
|---|
| ID | 4975276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium gilvum PYR-GCK |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009338 |
|---|
| Strand | - |
|---|
| Start bp | 4220779 |
|---|
| End bp | 4221648 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640458188 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001135220 |
|---|
| Protein GI | 145224542 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.28492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTTCG CCAAAGGGCA CGGGACGCAG AACGACTTCG TGCTGCTGCC CGACCTGAAC
GCGCAGTATT CGCTCACCGC CCGCGCGGTG GCGGCGCTGT GCGACCGCCG ACGCGGTCTG
GGCGCCGACG GGCTGCTGCG GGTGACCACC GCAGGCGCCG CGCTGGCCGC CGGCGTGTTC
GACCGGCTCC CCGAAGGGGT CGCCGAGGAC GACTGGTTCA TGGACTACCG CAACGCCGAC
GGGTCGATCG CCGAGATGTG CGGCAACGGT GTGCGGGTGT TCGCGCACTA TCTGCACGCC
GGCGGGCTGG AGCACCGCAG CGAGTTCGTC GTCGGCTCGC TGGCCGGCCC CCGGCCGGTC
GTGCTGCACG AGGCCGACGA CACCACCGCC GACGTCACCG TCGAGATGGG CAAGGCCGTC
CGGTGCGGGA CGGGAACCGC CACCGTCGGC GGACGGAGGT TCTCCGGGCT GGCGGTGGAC
GTCGGCAACC CGCACCTGGC CTGCGTCGAC GAGGAGCTGA CCGACGCCGG TCTGGCCTCC
CTCGACGTCG CGTCTCCCGT GGCGTTCGAC TCCACGCAGT TCCCGCACGG CGTCAACGTC
GAGATCCTGA CGGCGCCGCG CGACGGCGCG GTGGCGATGC GGGTCCACGA GCGCGGCGTG
GGGGAGACCC GCTCCTGCGG CACCGGCACC GTCGCGGCCG CGGTCGCGGC CCTCGACCAC
CAGGGCGCAC GCACGGGCAC GCTGCGGGTC CGCATCCCCG GCGGCGAGGT CTGCGTCACC
GTCACCGAGA CCGACAGTTA TCTGCGCGGG CCCTCGGTGC TGCTCGCGCA CGGTGAGCTC
GCCGAACAGT GGTGGGCGGC CCAGCATTGA
|
|---|
| Protein sequence | MKFAKGHGTQ NDFVLLPDLN AQYSLTARAV AALCDRRRGL GADGLLRVTT AGAALAAGVF
DRLPEGVAED DWFMDYRNAD GSIAEMCGNG VRVFAHYLHA GGLEHRSEFV VGSLAGPRPV
VLHEADDTTA DVTVEMGKAV RCGTGTATVG GRRFSGLAVD VGNPHLACVD EELTDAGLAS
LDVASPVAFD STQFPHGVNV EILTAPRDGA VAMRVHERGV GETRSCGTGT VAAAVAALDH
QGARTGTLRV RIPGGEVCVT VTETDSYLRG PSVLLAHGEL AEQWWAAQH
|
|---|
| |