Gene Mflv_3816 details

Gene Information

• Locus tag: Mflv_3816
• Symbol: secD
• ID: 4975132
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Mycobacterium gilvum PYR-GCK
• Kingdom: Bacteria
• Replicon accession: NC_009338
• Strand: -
• Start bp: 4077367
• End bp: 4079220
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640458040
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001135076
• Protein GI: 145224398
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.258625
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.421333
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCATCGT CTTCGACGGT TCACCCTGCC CGCTACCTGG CTTTGTTCCT GGTGTTGCTC 
ATCGGCGCGT TCCTGCTGGT GTTCTTCACC GGCGACAAGA AGCCGGACCC GAAGCTGGGC 
ATCGACCTGC AAGGTGGCAC CCGTGTCACC CTGACGGCGC GTACCCCCGA CGGTTCGGAG 
CCGTCGCGCG ACGCGTTGCT CCAGGCCCAG CAGATCATCA GTGCCCGCGT CGACGGCCTG 
GGCGTCTCGG GGTCCGAGGT CATCATCGAT GGCAACAACC TCGTGATCAC GGTGCCCGGG 
GACGACACCA GCGAGGCCCG CAGCCTGGGG CAGACCGCAC GTCTGTACAT CCGTCCCGTC 
GTCCACGCGA TCCCGGCAGG CGAGGGTGCG GCACCGGGCG GCGCGCCCGA GGGGATGCCA 
CCGGGCGCGA TCCCGGGCAT GCCGGGGGGA GTCCCCGGGA TGCCTCCGGG TGCGATTCCC 
GGGATGCCGC CGGGCGCGAT CCCGGGCATG CCGGGGGATG CGATGCCGGG TATGCCGGAG 
GGCGCGATGC CGCTGCCGCC GGGAGCGCTT CAGGGCGGAC CCGGCGGGCC GGGCGAACCC 
GTCGCGCCGG CGCCACAGCC GCGTCCGTTC CCGCAGCAGC CGGCGCCGAG TCCGGCTCCC 
GAACCCCCCG CCGATCCGGC GGCGCCGATC CCGCCCGGCA CCCCTGCGGG GCCCGGCGGA 
ATGCCGGCCG ATGACGAGAA CCTGTCGCTG GCCGACCAGA TCAAACAGGA GAAGCTGCGC 
AGGCAGAGCT CCGACCAGAT GATCCAGATC CTCGCCATGC AGCTTCAGGC GAGTCAGTGC 
GGTCAGGAAG ATGTGCTCGC CGGCAACGAC GACCCGAACC TGCCGCTGAT CACCTGCTCG 
CAGGACGGCA CGACCGTCTA CCTGCTGGAC AAGTCGATCA TCGCCGGCGA AGAGATCGCG 
AATGCGACAT CGGGCCTCAA CCAGCAGGCC GGCGAGTACG TCGTCGACCT CGAGTTCAAG 
GATCAGGGCT CCAAGACCTG GGCGGAGTTC ACCGCCGCCA ACGTCGGGGT GCAGACCGCC 
TTCGTGCTCG ACTCCAAGGT GGTCAGCGCG CCGGTCATCA ATGAGCCCAT CCCCGGCGGC 
AAGACCCAGA TCACCGGGCA GTTCACCCAG GACACCGCCC GCGAGCTGGC CAACGTGCTC 
AAGTACGGGT CGCTGCCGCT GTCGTTCGAG TCCTCCGAGG CCGAGACGGT CTCCGCGACG 
CTCGGGCTGT CCTCGCTGCG GGCGGGGCTG ATCGCGGGTG CGGTCGGTCT GGCCGCGGTG 
CTGTTGTACT CGCTGCTCTA CTACCGGGCG CTCGGCGTGC TCATCGCGCT GTCGCTGGTG 
GCCTCGGGTG CGATGGTGTT CGCGATCCTC GTGCTGCTCG GCAGGTACAT CAACTACACA 
CTCGATCTCG CCGGTATCGC CGGTCTGATC ATCGGTATCG GTATGACGGC CGACTCGTTC 
GTGGTGTTCT TCGAACGCAT CAAGGACGAG ATCCGGGAAG GACGCTCGTT CCGGTCGGCG 
GTGCCCCGCG GCTGGGCCCG TGCCCGCAAG ACGATCCTGT CCGGTAACGC CGTGACCTTC 
CTCGCCGCCG CGGTGCTGTA CTTCCTGGCG GTCGGACAGG TGAAGGGCTT CGCGTTCACG 
CTCGGCCTCA CCACGATCCT CGACGTGGTC GTCGTGTTCC TCGTGACGTG GCCGCTGGTC 
TACCTGGCGT CGAAGTCGCC GCTGTGGGCC AAGCCGTCGT TGAACGGGCT CGGCGCCGTC 
CAGCAGATCG CACGCGAACG CCGAGCGGCC GCCACCGCGG CGGGACGGGG ATAG 

 

Protein sequence

MASSSTVHPA RYLALFLVLL IGAFLLVFFT GDKKPDPKLG IDLQGGTRVT LTARTPDGSE 
PSRDALLQAQ QIISARVDGL GVSGSEVIID GNNLVITVPG DDTSEARSLG QTARLYIRPV 
VHAIPAGEGA APGGAPEGMP PGAIPGMPGG VPGMPPGAIP GMPPGAIPGM PGDAMPGMPE 
GAMPLPPGAL QGGPGGPGEP VAPAPQPRPF PQQPAPSPAP EPPADPAAPI PPGTPAGPGG 
MPADDENLSL ADQIKQEKLR RQSSDQMIQI LAMQLQASQC GQEDVLAGND DPNLPLITCS 
QDGTTVYLLD KSIIAGEEIA NATSGLNQQA GEYVVDLEFK DQGSKTWAEF TAANVGVQTA 
FVLDSKVVSA PVINEPIPGG KTQITGQFTQ DTARELANVL KYGSLPLSFE SSEAETVSAT 
LGLSSLRAGL IAGAVGLAAV LLYSLLYYRA LGVLIALSLV ASGAMVFAIL VLLGRYINYT 
LDLAGIAGLI IGIGMTADSF VVFFERIKDE IREGRSFRSA VPRGWARARK TILSGNAVTF 
LAAAVLYFLA VGQVKGFAFT LGLTTILDVV VVFLVTWPLV YLASKSPLWA KPSLNGLGAV 
QQIARERRAA ATAAGRG