| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3086 |
|---|
| Symbol | |
|---|
| ID | 4956896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 3350600 |
|---|
| End bp | 3352381 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640182274 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001114413 |
|---|
| Protein GI | 134300917 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTATTTTT ATGCCAGGGC TGGAGGTAAA TTACCATTTA CTGTCGAATG CTCAACGAAG
GTAAGGGGGG TGGTTATTAT TTCAAGACAA GGAAGTCTTG GTTTACTATA TACATGGACA
ATCATTATCC TGGGCGGCGG CTGGCTGTGG ATAGTTTTTC CACAGCTTAA CTTTGACCAG
ATTGATACCC TGGCTATTCT TATCGTTCTG GGAATATTAG CTGAATGGGT GGCGGTGCCC
TTTTCCCAGG GCTATCTTTC CGGAGGATTT GTTATTGTCC TTGCTGCTCA ATTAATTGGC
GGGGGAGTAG CCACGGTCTG GGTTACGGGG CTTATTTCAG TCATTGGCCT GGGCATTGCC
AATCGAGGCA ATCCCCTAAG AACAACCTTG TTTAACGGTG CCCAACATGT TTTGGCAGCG
GCCGTTGCGG ACATTGCCTT TAGTCTGACA AACGGTGAGG TTTTGCCCAT ATTTCTCTAC
ACACTGGTAT ATTTCGGGGT CAACCATTTA CTGGTCTACC TTTATCTGTT GCCCGGTTGC
CGGGATCACC CGGGACTCTT TGGTTGGGAT GCCCTGCGCT GGGACAGTTA TACCTACCTC
TTAACGGCTC CCTACGGTGC CTTAATGGCT AAGCTATATT TAACCAGCGG CACCAAATGG
GCCCTGTTAT TCTTTCTGCC GGTACTGGCG GCTCAGATCC TACTGAAAAA ATATGTACAG
TTGGAGGAAT CCAACCGGGA ATTGACCGCC CTTTTTCAAG TGGCCAAGGG ACTGCGGGGC
AGATATCAAC AGGAGGAGTT CTTTGATCAA ATACTGCAAG AAGCTCGACG TATGGCTGAC
TATCATACAG CACTTATTCT AATCTGGTCC CAGGAACGTC AGTTGTTTTT GCCCGGAGCA
GCCCAGGGAG CAGCTCTGGA AGAAACACGC AATCTTGTGC TAACACCGGG TGAAGGATTA
GTGGGACAGG CTGTACAAAG TAAAGAATCC CTCCTGGTGG ATGATATAAG GGAAATCCCT
GCCGTAGATG CAGGACCCTT TGGAAAATTT CGCTCCTTGT TAATCACACC CCTATTGTCC
CAGGGGGAAG TGACCGGAGT TTTGATTTTA GGAGAAATGC GGCCCTATGC CTACGAAGAG
AAACACTTGC AAATGTTAGA CATCATTGGT GGGCAAGCCG GTATCGTACT AGCCCATGGC
ATGTTGTTGG ATAAAATAAA GTATCTGTCC GTCACAGATC GCCTCACTAA TTTTCTGCAC
CACCGACAGT TTTACCAACT GGTGGTCAAG GAAATGGTAA AAGCCAATGC CGAAGGGACG
CTGGGAGCGC TCCTGCTGGT GGATATTGAT AACCTGCGCC GCTTTCAGGC ACATTACGGT
CATGCCGCAG GGGATGGGGT TATTCAAATG GTGGCCTCAG TTTTGCGGGA TGTCACCCCG
CCCTCTGATA TTCTATGCCG TTACGGGGGC GGCGAATTGG CCGTGTTAGC CATGGGTTTG
GCTACCCCCG AGGCGTTGCA ACTGGCAGAA AAAATAAGAA TCGAAGTCAG GGACCGCCGG
TTGATGCCAG AAGGTGCCAG GGCCCAGGTT ATGGTTACGG TATCCATTGG TGTGGCGGTC
TTTCCCCAGG ACGCCTCGGA TCCGGATAAA CTTTTTCAAG GGGCGGAAAA GGCTGTAGCC
AGGGCCAAGG AGTTGGGGCG AGATCGCTCC ATTGCCTACA GCCAGCTTAT CAAGCAAATG
AAATTCAAAA TTACCAGTGC TAAAAACAAC GTAGTTCAAT GA
|
|---|
| Protein sequence | MYFYARAGGK LPFTVECSTK VRGVVIISRQ GSLGLLYTWT IIILGGGWLW IVFPQLNFDQ
IDTLAILIVL GILAEWVAVP FSQGYLSGGF VIVLAAQLIG GGVATVWVTG LISVIGLGIA
NRGNPLRTTL FNGAQHVLAA AVADIAFSLT NGEVLPIFLY TLVYFGVNHL LVYLYLLPGC
RDHPGLFGWD ALRWDSYTYL LTAPYGALMA KLYLTSGTKW ALLFFLPVLA AQILLKKYVQ
LEESNRELTA LFQVAKGLRG RYQQEEFFDQ ILQEARRMAD YHTALILIWS QERQLFLPGA
AQGAALEETR NLVLTPGEGL VGQAVQSKES LLVDDIREIP AVDAGPFGKF RSLLITPLLS
QGEVTGVLIL GEMRPYAYEE KHLQMLDIIG GQAGIVLAHG MLLDKIKYLS VTDRLTNFLH
HRQFYQLVVK EMVKANAEGT LGALLLVDID NLRRFQAHYG HAAGDGVIQM VASVLRDVTP
PSDILCRYGG GELAVLAMGL ATPEALQLAE KIRIEVRDRR LMPEGARAQV MVTVSIGVAV
FPQDASDPDK LFQGAEKAVA RAKELGRDRS IAYSQLIKQM KFKITSAKNN VVQ
|
|---|
| |