| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3053 |
|---|
| Symbol | |
|---|
| ID | 4956719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 3314604 |
|---|
| End bp | 3315932 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640182241 |
|---|
| Product | protein of unknown function UPF0052 and CofD |
|---|
| Protein accession | YP_001114380 |
|---|
| Protein GI | 134300884 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01826] conserved hypothetical protein, cofD-related |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCTTCCT TATTTAAATG GTTTGCCCCT GGCATGAATA TAAAGCGTTG GATTCTCCTA
GCCCTAGTAG GAATTTCCCT ACTGGGGCTA GGGTTGGCCA TACTGGACCG GCATCTGGTT
GGCATGATGG GGGTGGTGAT GGATACCCTC TCTAACCGAT TAGCTGGCAT TCCCCAGTGG
TTTGTGGGCG TGGTTATTGT AGCCAGCGGC CTAGGCATTA TGGGATACAG CTTTAAAATG
GGGATAGCCT CCATTATGAC AGTGATTCGA CCAGACCCTT CGGAACGTCT GGTGGAAACC
CTTTACCACC ACCGTTCTTT GAAAAAGGGT CCCAAGGTGG TGGCCATCGG CGGGGGAACC
GGGCTATCCA GTTTGTTAAA GGGCTTAAAG GAATACACCA GCAACATCAC CGCCATTGTG
GCCGTTACCG ATGACGGTGG CAGTTCCGGC AGATTACGGG ATAATTTGGG TATCCTGCCA
CCCGGCGATA TCCGCAACTG CCTGGTGGCT TTGGCGGATA AAGAGACCTT AATGGAAGAA
GTGCTGCAGT ACCGCTTTGA AAGCGGCGAA CTGGCAGGAC ACAATCTGGG CAATCTTTTT
CTGGCGGGCT TAAACAATGT TTCCGGCGGT TTTGATGGGG CTGTGCGGGC CCTTTCCAAG
GTACTGGCCA TTCGTGGCCA GGTACTGCCG GTAACCCTGG AAAACGTCAT ACTGGGGGCG
GAACTGGCGG ATCATAGCAC GGTTTATGGG GAATGCAACA TTTCCGCCAC GGAAAGCAAA
ATTAAAAGGG TTTTTCTGCA CCCGGAGGTT TGTAAACCCC TGCCCGAAGC CCTGGCGGCC
ATCGAAGAGG CCGACATGAT TATCCTGGGA CCCGGCAGCC TTTATACCAG TGTGATTCCG
AACCTCCTGG TGGAAGGCAT TGCCGAGGCC ATTCAAAGGT CCGGGGCCCA GAAAATCTAT
ATTTGCAATA TCATGACCCA GCCCGGGGAA ACCCAGGGTT ATACGGCCAA ACAACACCTG
GCGGCCATTT TTGACCATGT GGGACCCCTT GTGGACCAAA TCCTGGTGAA TAACGAGCCC
ATTCCCGGCA GGCTGCTGAA AAAATACCGG GAAAAGGGTG CCGCCCCGGT GAAGGTGGAT
GGAACTGCCC TGGCCAAAAT GGGCGTCAAG GTCTGGTCAA AATACCTGGT ACAGCACAGC
AACCTAGTGC GCCACCAACC GGAAAAACTG GCCCAGGCCG TGATGGAAAT TATTTACGAT
TCCAAGGCAG CCAGTATGGA GCGAGCACCA GTCAAGATAT ACCAACCATC AAGAACCTTA
AGAGAATAG
|
|---|
| Protein sequence | MASLFKWFAP GMNIKRWILL ALVGISLLGL GLAILDRHLV GMMGVVMDTL SNRLAGIPQW
FVGVVIVASG LGIMGYSFKM GIASIMTVIR PDPSERLVET LYHHRSLKKG PKVVAIGGGT
GLSSLLKGLK EYTSNITAIV AVTDDGGSSG RLRDNLGILP PGDIRNCLVA LADKETLMEE
VLQYRFESGE LAGHNLGNLF LAGLNNVSGG FDGAVRALSK VLAIRGQVLP VTLENVILGA
ELADHSTVYG ECNISATESK IKRVFLHPEV CKPLPEALAA IEEADMIILG PGSLYTSVIP
NLLVEGIAEA IQRSGAQKIY ICNIMTQPGE TQGYTAKQHL AAIFDHVGPL VDQILVNNEP
IPGRLLKKYR EKGAAPVKVD GTALAKMGVK VWSKYLVQHS NLVRHQPEKL AQAVMEIIYD
SKAASMERAP VKIYQPSRTL RE
|
|---|
| |