| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1585 |
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| Symbol | |
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| ID | 4958372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 1724934 |
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| End bp | 1726655 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640180759 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001112938 |
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| Protein GI | 134299442 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000290099 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGTTAA TCTATACTGG AGCAAAATGT CGTGATTGCT ACCGTTGTGT AAGGATCTGC
AACTTAAAGG CCATCAGGAT GAATACCGGT CATCAGGGCA GATTTCATGC CCAGGTCATA
GATGAACTTT GTGTCCATTG CGGCCAGTGT ATTCTTGCTT GCCCCCAAAG GGCCAAAAGG
CCCGTTTCCG ATCTCAAAGA AGTAAAACAA CTCTTGGCCG AAGGAACCCC CGTCATTGCC
GTGGTGGCCG CTTCCTTCAT CAGTGCCCTT CCCCTGAAAA AACCGGATTT ATTGCCAACC
CTATTAAAGA AATTGGGTTT TATTGAAGTT CAAGAAACCT CCATTGGTGC TGGTATGGTT
ACACAAGAGT ATCTAAACAT GGGTTTTGAA ACCCCCCGCC TGATTAGTTA CTGTCCGGTG
ATTGTTAATT TAATTGAGCG GTATTATCCC GAATTAATTA CCCTGCTGGC TCCCATCGTT
TCACCTATGA TCGCCCAGGG AAGAATTATA AAATCCCTCA ATCCCTATGC CAAAGTGGTC
TACATAGGCC CCTGTGCAGC CAAACGGGAT GAAGCTCAAC TCCTGGGCCT GAAGGATACC
ATTGATTATT TCCTGGGTTT TAACGAGCTA TGGGATTGGA TTCAGGACTC GGTACCCTTG
ACGGAAGATC TTTCCCCTTC GGCCTTTGAC AGCTTTTCCC CTTGCCAAAA CCGCATTTAT
CCCGTGGAAG GCGGTGTCAT TTGGGCCGTA GCCGAAGAAC TGCGGCAAGC CGGGGAAGAT
TTTCTGACCA TATCTGGTTT GGACAGTTGC ATCGAATTTG TTAAACACCT TAGTCAAGGA
CAGATTACAA ACCCTCCTAA GTTAATGGAA CTCTGGGCCT GTAAAGGTGG CTGCATTAAT
GGTCCCCTTT CCCTCTGTCT GGAAGAAAGT CTTTTTATGC GACAACGCAA ACTTCTGGAG
TATTACAACT CGTCCGGTGA ATGTGTTTTC GTAATTGATG ATTATAAACT GCCTGAGATT
CCTTTAAAAA GAGATTTTGT CAACCGTAAG GTGGAGCAAC CCTATCCAAG TGAAGCTGAA
ATTCAAGGTA TTTTGGCCAG AACCGGCAAA TTATCAGCAG CCCAGGAGTT TAACTGCGGA
AATTGTGGCT ACAACTCCTG CCGTGACAAG GCTGTGGCTG TTTATCAGGG TAAGGCCGAA
GTAGAAATGT GTATTCCCTA TATGAGAAAA CGGGCAGAAT CCATGTCAAA TCGGGTCATT
TCGGCCATGC CCAATGCCAT CATCGTGGTG GGTAAAAATC TGGATATTTT AGAGATCAAT
CCAGCGGCAG AGGCACTCTT TCAGTGTTCT GCTTCCGAGG TTGTGGGACA AAGACTTCTC
ACTCTAATGC CTGCCACTAA TTTCTTGAAG GTGATTCAAA GCGGGGAAAT GATTAATACC
ACCGAGACCT ATCCCTTACT GGGGATTGTC ACCCATGAGA TTATTTTCCC AGTCAAAGGA
ACCGATGCGG TGGTGGGAAT CTTTATTAAC ATAACTTCCG AAAAGAAACA GCGGGAACAG
TACGAATTAA TTAAAAGTCA AACCATCCAA CAGGCCCAGG ATGTAATTGA AAAACAAATG
ATGGTGGCCC AGGAAATAGC GGGTCTGCTG GGCGAAGCAA CGGCGGAGAC CAAGGTTCAA
CTGGGTAAAT TAATTAAATT AATGCGGCAA GAAACCCTTT AG
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| Protein sequence | MGLIYTGAKC RDCYRCVRIC NLKAIRMNTG HQGRFHAQVI DELCVHCGQC ILACPQRAKR
PVSDLKEVKQ LLAEGTPVIA VVAASFISAL PLKKPDLLPT LLKKLGFIEV QETSIGAGMV
TQEYLNMGFE TPRLISYCPV IVNLIERYYP ELITLLAPIV SPMIAQGRII KSLNPYAKVV
YIGPCAAKRD EAQLLGLKDT IDYFLGFNEL WDWIQDSVPL TEDLSPSAFD SFSPCQNRIY
PVEGGVIWAV AEELRQAGED FLTISGLDSC IEFVKHLSQG QITNPPKLME LWACKGGCIN
GPLSLCLEES LFMRQRKLLE YYNSSGECVF VIDDYKLPEI PLKRDFVNRK VEQPYPSEAE
IQGILARTGK LSAAQEFNCG NCGYNSCRDK AVAVYQGKAE VEMCIPYMRK RAESMSNRVI
SAMPNAIIVV GKNLDILEIN PAAEALFQCS ASEVVGQRLL TLMPATNFLK VIQSGEMINT
TETYPLLGIV THEIIFPVKG TDAVVGIFIN ITSEKKQREQ YELIKSQTIQ QAQDVIEKQM
MVAQEIAGLL GEATAETKVQ LGKLIKLMRQ ETL
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