| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1221 |
|---|
| Symbol | |
|---|
| ID | 4955360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1297147 |
|---|
| End bp | 1299096 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640180391 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001112580 |
|---|
| Protein GI | 134299084 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4385] Bacteriophage P2-related tail formation protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA GCATCTATGA TGTGAGCCTT CTCGATATAA TGCCGCAGTC GCTTTTAGCT
GACCCATTTA TCAAGGCCAT GGCGATGGCC CTGGATCCCG AGCTTCAGGC GATATCATCA
GAGATTATTC TTTGTTCGTT ACTGCCAAGG ATTGATGATT TGCCGGAGGA TATCGTTAAT
CATTTGTTGG TTCAGTTTCA CGTTGATTTT TGTTATTCCG ATTTAACTTT GGATCAAAAA
AGGACGCTGG TTAAACAAGC TTTGCCCTGG CACCGGCGCA AAGGAACGCC GGCAATGGTG
GAGGAAGTCG TTAGCGTATT ATTCGGCGGG GATGCAAAGG TTTCCGAGTG GTTTGAATAT
GGGGGGCAGC CGTTTTATTT CAAGATAAAA ACAGAAGCTA TAGATACAAC TCCAGCTCAT
TTAGAAGCAA TCAGAAAAGC TGTTAATTTA GCAAAGAACA GCAGGTCATG GCTGCAGTCA
ATTGGTTTCT TGCTAAATCT AAAGGAAGAA GTCAATCTGG AATTAACTTT ACAAAGCAGC
ATACCTATTG CTGATTTTAA AGAAGCTGTT TTGCGGCCCG GTTTTAGACA CTGTACGGAT
GCAAAGATTT ACCGCGATGT GTTTGGAATC ATTGATTATA AAAGCGTGGT TAACCATAAT
GGTAAATTCT TGCACCTTAA TGACGAGCAG GTGCTGGAGG TTATTACGGA GCCCAGCGGC
ATACCGCGTG CTGGTGTTAG GTACGCAGGA ACGATTGATT ATAACGGGCA AATAATTCAC
GATAGCAGCC TTAATCATGA CACAAAACCA GATACTTGGG TACCGCATGA GTATACGGCT
CTTGGAGAGG ATGAAGAAAG CGCGACGGTT TCGGTAACTC CGAATTTATC CGATGCTCAG
GAACACTGGA TTTATTATTC GGCTGACTGG AAGCATAACG AGAATTACCA CGGACCCAGA
GCGGCCCATT CCAGAATTGG CAGCATAGAT GCAACTTTAG CTACCAGTGA TACTGTTGAT
ACTCAGGAGC TGAAGCAGTT ATCATTAACT CGTGATTTCG TTGATAATCT TACCGGAAGA
CCACGCATTC ACGGCCCTGT CGGTATGGAA GCTTACGCGA GAGGCTTTAG GCATGATATC
TCCTTCCCGA GAAATGAATT AAATCTTAGG TGGGGGCTAT TCAAATATTG GGGCAGTATA
AAGCGGTCGA TATTATGGAA ACACGACGGA AGTATTAATT ATAGCTACTT TGAAGGTGAA
CGTTCAACCG ATGTTAGCGT ATCTATGGCC GCTGAAACAA CAGCCGTAGC GCCTAAATAC
AACGGCTTGC ATAGGCATAC CACAAACGGT CTTAGTGGAA CTAGCCGATT ACCCGGGCCG
GTTAATGATT GCGTTGTGGA GCCGCTTGAA GCATCGCTTC AGTATATCGA TCAGGTTCCC
GATGCGGATG GAATTGTACA GGAGAATGCT AATATTACAA TCCATGCTGA GGAGCTATTT
AACCGTAAAT CCAGACAGCA CGATGGGGAG CTGCTTTATA CCGGGAAAGG TCCACGTAGC
GGACCGTTTG TGTATAACGG GGTATACCTG CATGAACAAA CTGCAGAAAA CAGCTTAAAT
AAAGCAGCTA TTACTCTTTC GGACATGAGC TGCCGCCGTA GATACGGCGG TATTTTTAAT
GCCCATAACC GAGGTCGCCG CTGGTATCAT ACCGGGCAGT TATTGCGCAG GCCTTTTGGC
CGTCACGGCA GCGCCTGGCA GCATGATAGC CTGCAGCGGT ATCTGGAAGG GTGTGCAAGG
TACGGAGATC CCGCCTACAT GCATGATGGC ATTGATAGTT ACGGATTCCC GCGCCTGGTA
CATGATGGCT CTGTTTTGCG TTTGGAAATG GTACCAGAAG AACGCATGCA GCTTAATATT
CGGCGGGGAT ATCGCCGTGT GGCAGCTTAG
|
|---|
| Protein sequence | MSKSIYDVSL LDIMPQSLLA DPFIKAMAMA LDPELQAISS EIILCSLLPR IDDLPEDIVN
HLLVQFHVDF CYSDLTLDQK RTLVKQALPW HRRKGTPAMV EEVVSVLFGG DAKVSEWFEY
GGQPFYFKIK TEAIDTTPAH LEAIRKAVNL AKNSRSWLQS IGFLLNLKEE VNLELTLQSS
IPIADFKEAV LRPGFRHCTD AKIYRDVFGI IDYKSVVNHN GKFLHLNDEQ VLEVITEPSG
IPRAGVRYAG TIDYNGQIIH DSSLNHDTKP DTWVPHEYTA LGEDEESATV SVTPNLSDAQ
EHWIYYSADW KHNENYHGPR AAHSRIGSID ATLATSDTVD TQELKQLSLT RDFVDNLTGR
PRIHGPVGME AYARGFRHDI SFPRNELNLR WGLFKYWGSI KRSILWKHDG SINYSYFEGE
RSTDVSVSMA AETTAVAPKY NGLHRHTTNG LSGTSRLPGP VNDCVVEPLE ASLQYIDQVP
DADGIVQENA NITIHAEELF NRKSRQHDGE LLYTGKGPRS GPFVYNGVYL HEQTAENSLN
KAAITLSDMS CRRRYGGIFN AHNRGRRWYH TGQLLRRPFG RHGSAWQHDS LQRYLEGCAR
YGDPAYMHDG IDSYGFPRLV HDGSVLRLEM VPEERMQLNI RRGYRRVAA
|
|---|
| |