| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_pSN254_0187 |
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| Symbol | traF |
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| ID | 4929473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009140 |
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| Strand | + |
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| Start bp | 165346 |
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| End bp | 166374 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642572484 |
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| Product | type IV conjugative transfer system protein TraF |
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| Protein accession | YP_001102059 |
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| Protein GI | 134047253 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02740] TraF-like protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.00056755 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCGTGAGA CTATGAAAAA ATCACCTTTG AATTTACTGC TCCTTGCAGC GCTCACGCTG
GGGGCATCAC ACCAGGCTTG GGCTCAAGAT GGCACAAGAC CTGGTTTTTA TGAGCGAAAG
GAAGAGGGTT GGTTCTGGTA CAAGGAAGAG CCCAAAGAAC CAGAGAAAAA ACCCGAAAAG
CCCAAACCAA AGCCTGTGGC AGAAGCGAAG CCTACACAGC CTAAGCCTGC TGCTCCGCTT
CCGAGCGGCC CAGAAATGTT CTCAGCGGAA TGGTTCCGGG AAAACTTACC CAAGTACAAA
GACCTTGCTT GGAACAATCC TACCGTTGAA AACGTCAGGA CGTTTCTCTA CTTGCAACGA
TTTGCGATAG ATCGCTCTGA ACAATTTTCC GATGCTACAG AGCTGGCGGT CGTAGGTGAT
CCTTTCTTGG ATGAAATTAC TCGACGTCCT GCTGCCACGT TTGCCTCACA ACAAGTTGAT
CGTGACGCTG GTAACGCCAA AAACATGCTA CTCAAAAGCG TAGCCGAACG CGTAGGGATA
TTCTTCTTCT ACAAGTCCGA CGATGACTAC AGTGACTTGC AAGCACCGCT CATCAAGATG
TTGGAACAAG GAGAAGGATT CTCGATCATT CCTGTATCTA TGGACGGCAA ACCACTCCCC
AGTGGGCTTT TCCCCCATTA CAAAACCGAT GAAGGCCATG CCAAACAACT TGGTATCGTA
ACTTTCCCTG CTGTTTACCT CGCATCTCCA GACGGTCAGT TCGCTCCTAT AGGACAAGGG
CCAATGTCTC TTCCTGAGCT GAATCACAGG ATTTTGGTCG CAGCAAAACG CAATGGTTGG
GTCACAGACG AAGAGTTTAA CCGTACACGT CCGGTACTCA ACCTGGAAAA CAACATAGCC
GAACGCTTGG CCTCACCAGA GCTGGGCTCT GACCTCAAAC AGCTATCTCA AGCGAGCGGT
GATAAAGACA ACTTTGTGCC ACCGGAACAA CTCATGAAGT ACATCCGGGA CAAATTACAG
GAGAACTAA
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| Protein sequence | MRETMKKSPL NLLLLAALTL GASHQAWAQD GTRPGFYERK EEGWFWYKEE PKEPEKKPEK
PKPKPVAEAK PTQPKPAAPL PSGPEMFSAE WFRENLPKYK DLAWNNPTVE NVRTFLYLQR
FAIDRSEQFS DATELAVVGD PFLDEITRRP AATFASQQVD RDAGNAKNML LKSVAERVGI
FFFYKSDDDY SDLQAPLIKM LEQGEGFSII PVSMDGKPLP SGLFPHYKTD EGHAKQLGIV
TFPAVYLASP DGQFAPIGQG PMSLPELNHR ILVAAKRNGW VTDEEFNRTR PVLNLENNIA
ERLASPELGS DLKQLSQASG DKDNFVPPEQ LMKYIRDKLQ EN
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