| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_pSN254_0110 |
|---|
| Symbol | |
|---|
| ID | 4929526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009140 |
|---|
| Strand | + |
|---|
| Start bp | 97249 |
|---|
| End bp | 98259 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642572409 |
|---|
| Product | putative phage-type endonuclease |
|---|
| Protein accession | YP_001101984 |
|---|
| Protein GI | 134047100 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5377] Phage-related protein, predicted endonuclease |
|---|
| TIGRFAM ID | [TIGR03033] putative phage-type endonuclease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 0.300181 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG TCAACCTATC GCAACGCGAG GAAGATTGGC TTGATTGGCG GCGTCAAGGT
GTAACAGCCA CTGACGCCGC TATCCTGCTC AATCGGTCTC CGTACAAAAC ACGATGGAGA
CTGTGGGCCG AGAAGACTGG GTATGCGCGT GAAGTCGATC TGAGTCTTAA TCCGCTGGTT
CGCCGGGGGA TAGAAAACGA AGATGCTGCA AGACGCGCTT TCGAGGAGAA GTATGATGAC
ATGCTGCTCC CCGCCTGTGT CGAATCGGTT CAATACCCGC TCATGAGGGC CTCCCTGGAT
GGCCTGAGAG ATAACGGGGA GCCCGTCGAG CTGAAAAGCC CGAGTGCGAC TGTCTGGGAA
GATGTTTGTG CTGAGAAAGC AAACAGCAAG GCATACCAGC TTTATTACCC GCAGGTGCAA
CACCAGCTCC TGGTAACGGG GGCCAAGCAA GGCTGGTTAG TCTTCTACTT TGAAGGTCAG
ATTCAGGAGT TTCCAATACT CCGAGACGAA GCCATGATTC AAGAAATCTT GGCCGAGGCT
AAAAAGTTCT GGCAACAGGT AGTAGACAAG AAGGAGCCCG ACAAAGATCC AGAGAGAGAC
CTGTACATAC CGCAAGGTGA AGAGGTCAAC CGTTGGATTG CTGCTGCTGA GGAATACCGC
CTCTATGATG CAGAGATTCA GGAGCTGAAA CAGCGACTGT CTGAGCTTCA AGAAAGGCAA
AAGCCTCATC TCGACACCAT GAAGTCCCTC ATGGGGGAAT ACTTCCATGC CGACTACTGC
GGTGTGATGG TAACGAGATA CAAAGCGGCT GGCCGGGTAG ACTACAAAAA GCTGTTGGCT
GATAAGGCGT CAGGCGTGAA GCCTGAGGAT GTTGACCAGT ACAGAGAGAA GTCATCAGAG
CGGTGCCGTG TAACGGTTAC TGGCTCTGTG AAGCCACGGT ACATTGTTGA TGAGGACGTG
CTTGCTCCTC TTGATGATTT GCCGGAAGAA GTAGAGACGT TCTACTGGTG A
|
|---|
| Protein sequence | MKIVNLSQRE EDWLDWRRQG VTATDAAILL NRSPYKTRWR LWAEKTGYAR EVDLSLNPLV
RRGIENEDAA RRAFEEKYDD MLLPACVESV QYPLMRASLD GLRDNGEPVE LKSPSATVWE
DVCAEKANSK AYQLYYPQVQ HQLLVTGAKQ GWLVFYFEGQ IQEFPILRDE AMIQEILAEA
KKFWQQVVDK KEPDKDPERD LYIPQGEEVN RWIAAAEEYR LYDAEIQELK QRLSELQERQ
KPHLDTMKSL MGEYFHADYC GVMVTRYKAA GRVDYKKLLA DKASGVKPED VDQYREKSSE
RCRVTVTGSV KPRYIVDEDV LAPLDDLPEE VETFYW
|
|---|
| |