Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC5_1644 |
Symbol | |
ID | 4928954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C5 |
Kingdom | Archaea |
Replicon accession | NC_009135 |
Strand | - |
Start bp | 1581383 |
End bp | 1581940 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 640167150 |
Product | transcription initiation factor E subunit alpha |
Protein accession | YP_001098155 |
Protein GI | 134046670 |
COG category | [K] Transcription |
COG ID | [COG1675] Transcription initiation factor IIE, alpha subunit |
TIGRFAM ID | [TIGR00373] conserved hypothetical protein TIGR00373 |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.275573 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTAT CAAAAGATGA GATATTTACA ATGCTCGAAA ACCCACTAAT ACAACAGGTA CTTTTCGAAA TAATGGATGA AGATGTTGTT GGTTTTGACG TGTTGTCAGT ATTAATCAAT ACTAATGAAG TAACTGATGA TGAAATTTCA AGACAGTTAG ACGTAAAATT AAACAACATT AGAAGAATAC TTTACAAATT ATATGAGGCA AGGCTTGTAG ATTACAATAG GGAAAAAGAT GAAGAGACAA ACTGGTATAC ATACACATGG AAACCATCCC TCGAAAAAGT TCCTGCATTA GTTGCTAAAA AGATGAAAAA CGTACTCAAT GGTTTAAAAG AACAGCTTGA AATGGAAGAG ACAAACATGT TTTTCTTCTG TTCTGATTGT GAGATTAAAT TTACATTTGA AGATGCAATG GACAGTGGAT TTAGATGCCC ACAATGTGGT GGAATGATGT ACGAGTATGA TAATAAAAAA GATATTTCAC TATTAAAAGA GCAAATTAAT TATTTAGAGG ACGAATTTAC TAAAAATCCT CTCTTTTCTG CATATTAA
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Protein sequence | MNLSKDEIFT MLENPLIQQV LFEIMDEDVV GFDVLSVLIN TNEVTDDEIS RQLDVKLNNI RRILYKLYEA RLVDYNREKD EETNWYTYTW KPSLEKVPAL VAKKMKNVLN GLKEQLEMEE TNMFFFCSDC EIKFTFEDAM DSGFRCPQCG GMMYEYDNKK DISLLKEQIN YLEDEFTKNP LFSAY
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