| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1404 |
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| Symbol | truA |
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| ID | 4928977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | + |
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| Start bp | 1347353 |
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| End bp | 1348141 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640166900 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001097916 |
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| Protein GI | 134046431 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.43342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTACATAT TTAAGATTGC ATACGATGGA AAATTAAGCT TTCAAACACA GCCCCATGGA
GAAACCGTCT GTGACAAAAT TTCAAATGCA CTTTTGGACT GCGGATATTT AGATAACAAG
GATAAAGTTC CGCTTTACCA CGGCGGAAGA ACTGATCGAG GAGTAGCTGC ACTTGGAAAT
TACGTGGTTT ATGAAATGGA CAAAAAACCC GTACTTCCAA GAGTTCAGTC TAAACTTAAA
TGGGACGGAA TATGGGTTTT GGGATGTAAG GAGATTGAAA TTTTTCCAGA AATTGAACAT
AGGCACTACC AGTACACATT ACCAAACAAA AACCATGATG TCGAATTAAT GAAAAAGGCA
TCTGAAAAAC TAATCGGAAC ACATTATTTC CAGAATTTAT CAAAAAGGGA TAAAACAAAG
GTAAAAGATC CAGTTCGGAC ACTTTACGAC ATTAAAATAT CCTCAAATGA CTACTTTATT
ACCATTGATA TTTTTGGAGA GAGTTTTCTC TGGAACATGG TTCGAAGAAT TATTAGGCTC
CTTTCAGATA TTGGAAAACA CAAAATCGAG GATCCTGAAA AATTTATCGA ATTAATCCTA
TCGGAAGAAT ACAAAAAAGG TTACCCCCCA TCTCCTGCCG AAGGTTTAAT ACTGGTCGAC
GTCAAAACTA ATATTGACAT TGATTTGGAT AGTTATGTTA TTAGAAACTT AAAAAATAGC
TGGGAAAAAT CCCTGAACAA CAGTTTGATG AGACTTGGAC TCTGTAAAAC CGTTTTATCG
AAAACCTGA
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| Protein sequence | MYIFKIAYDG KLSFQTQPHG ETVCDKISNA LLDCGYLDNK DKVPLYHGGR TDRGVAALGN
YVVYEMDKKP VLPRVQSKLK WDGIWVLGCK EIEIFPEIEH RHYQYTLPNK NHDVELMKKA
SEKLIGTHYF QNLSKRDKTK VKDPVRTLYD IKISSNDYFI TIDIFGESFL WNMVRRIIRL
LSDIGKHKIE DPEKFIELIL SEEYKKGYPP SPAEGLILVD VKTNIDIDLD SYVIRNLKNS
WEKSLNNSLM RLGLCKTVLS KT
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