Gene MmarC5_0163 details

Gene Information

• Locus tag: MmarC5_0163
• Symbol: rpl6p
• ID: 4928311
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: -
• Start bp: 138443
• End bp: 138991
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 640165663
• Product: 50S ribosomal protein L6P
• Protein accession: YP_001096695
• Protein GI: 134045209
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03653] archaeal ribosomal protein L6P

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.00284437
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGTTG CAGCTTTAAT AAGGGAAGAA ATCGAAATTC CTGAAAACGT CAACGTTGAA 
ATTAATGGCA ACACAGTTGC TGTTAAATCT GGTGCAAAAG AACTCAGAAG AGATTTAATG 
TACCCGGGAA TCGAAATAAG CACAGAAGAC GGAAAAGTTG TTATTGAGTG TACATTCCCA 
AGAAAAGTAC AAACCGCAAT TGTTGGAACC TACAGATCAC ACATTCAAAA CATGATCACA 
GGCGTTACTG ACGGATTTGA ATACAAATTA GTAATCAGAT ACGCTCACTT CCCAATGAAA 
GTTAGTGCTA AAGGAAACAC TGTAACCATT GACAACTTCT TAGGAGAAAA ATACACTAGA 
ACTGCTAAAA TCATGGATGG AGTCACTGTA AAAGTTAGTG GTGAAGAAGT GATTGTAAGT 
GGAGCTAACA AAGAATTTGT TGGTCAAACC GCTGCAAACA TTGAACAAGC TACTAAAGTT 
AAAGGAAGAG ACACAAGAAT ATTCCAAGAT GGCATCTACA TTGTAGAAAA AGCAGGGAAA 
GTATTATAA 

 

Protein sequence

MPVAALIREE IEIPENVNVE INGNTVAVKS GAKELRRDLM YPGIEISTED GKVVIECTFP 
RKVQTAIVGT YRSHIQNMIT GVTDGFEYKL VIRYAHFPMK VSAKGNTVTI DNFLGEKYTR 
TAKIMDGVTV KVSGEEVIVS GANKEFVGQT AANIEQATKV KGRDTRIFQD GIYIVEKAGK 
VL