| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3862 |
|---|
| Symbol | |
|---|
| ID | 4923986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4593900 |
|---|
| End bp | 4594484 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640165488 |
|---|
| Product | resolvase domain-containing protein |
|---|
| Protein accession | YP_001095984 |
|---|
| Protein GI | 127514787 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0506724 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000235811 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA AGATTGGCTA TGCCAGAGTT TCAACCGACG ATCAAAACCT GCATTTGCAG
AGAGGTGCGT TGGCTGCTGC TGGTTGCGAG ATCATTTACG AGGACAAGGC CAGTGGGAAG
AATGCCGCTA GACCCGAACT TGATAACTGC TTAAAGGCTC TTAGACCAGG GGATACGTTG
GTCGTTTGGA GGCTAGATAG GTTAGGTCGT AGTTTGGCAG ACCTAGTGAA CGTTGTTACC
CATCTGGTTG ATGAGCGACG GGTTGGATTT TTGAGCCTAC AAGAACAGAT TGAAACGAAC
AGTGCTTCTG GAAAGCTGGT TTTTCATGTG TTTGCTGCTT TGGCTGAATT TGAGCGAAAT
TTGATTAGCG AACGTACCAA GGCGGGATTG GAAGCCGCAA GAGCTCGCGG GCGCTTGGGT
GGGCGGAAGC CAAAGTTACA GAAAAAAGAT ATCAGGGAGA TTAGGGCATT ACTCAAAGAT
GGTTCTATTC CTGTATCTGA TGTTGCTAGG CGATATGGTG TATCTAGAAC GACTATTTAT
AATCATGTAG GGGTGGTGAG TGTACAAAAT TCTAGAGGGG ATTAA
|
|---|
| Protein sequence | MNQKIGYARV STDDQNLHLQ RGALAAAGCE IIYEDKASGK NAARPELDNC LKALRPGDTL
VVWRLDRLGR SLADLVNVVT HLVDERRVGF LSLQEQIETN SASGKLVFHV FAALAEFERN
LISERTKAGL EAARARGRLG GRKPKLQKKD IREIRALLKD GSIPVSDVAR RYGVSRTTIY
NHVGVVSVQN SRGD
|
|---|
| |