| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3826 |
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| Symbol | |
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| ID | 4922831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4555855 |
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| End bp | 4557492 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640165455 |
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| Product | transposon Tn7 transposition protein TnsC |
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| Protein accession | YP_001095951 |
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| Protein GI | 127514754 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00109282 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTCTGC CAAGTGAGTA CGTTACTGCA GTCTATCAGG ATACTGGCAA CGGCTCCTAT
AAAGGCAACC CATTTATTGA GGCTCTTCCT CCAATAATGG AGATCAAACA GCTAAAAGAA
GGCTTGGAAG GCAAAGTTGA TTTTTCATTG GAGTATTTAC GGGAAAAACC ACGTCAGCGT
GCACATATGG TTGCTTCGTT GCTGGATGAT TTTTTTCAGC CACTATCCCA GCACGTTCTA
TTGGAAGAGC GCATATCCAT AATGATCCGC CGAGGATATG TGAGCAGGAA CCTTCAGGAT
GGTTCTCTCA ACCAACATCT TCAAAATGGC TATGAGCGTG TGATGTCTGG CTCATTACAG
AGTTATAAGT TCAGAAATGT GCTAACGACT GCAACCTGCT TATCACTGAT TGGTTGTTCA
GGTAGTGGCA AAAGCTCGAC TCTCGATCGT ATTTTGGCCA CTTATCCGCA AGTTATTTAT
CACGAGAAAC ATAACTTTTT CCAACTGAGT TATCTGAAAA TTGAGTGTCC AAATAACGGG
TCACAGCAAA GTCTATGTTT GAACTTTTTT AGGGAAGTCG ACAAGCGCCT AGGCACAAAA
TATGAGTCTG ATTATGGCGG GAAACGACAT GGCGTCCCTA CTTTGCTAGC ACTGATGAGT
CAGGTTGCTA ACCAGCGCGC GATTGGTGTT TTGGTGATTG ATGAAATCCA GCGGTTAAAG
ATTCGTAAGG CCGTCGGTCG AGAGCAGATG CTGGAATTCT TTGTTGAATT AGTCAATACC
GTTGGGATCC CTGTCATACT TGTTGGAACA CCGAAAGCCC GCCCCTTATT TGAGATCGAG
TTACAGTCGG CAAGAAGAAC AACTGGGATT GGTTCATTGT ATTGGCAGCC CATGCCGCAA
TATCCAGACA ACCCTGCGGA AAGAAGCGAG TGGGAAGCTT TTACTAACAA GTTATGGCGT
TACCAATGGT TGACTCGGCG TGACGAAGTC CTTACCGATG AAATAAGAGA TTGTTGGTAT
GAGCTATCGC AAGGTGTGCT AGATATTGTC GTTAAACTCT TTGTTCTGGC GCAACTGAGG
GCGATAGCTT CCAAATTGGA GCGTATAACG GTGAAGGTTT TGCGATCTGT TTATGAGACC
GAGCTAAAGC CCGTACATCC AATGCTGCAT GCGATTCGCC GAGGGAATCC TAACCTTATT
GCTAAGTACT CCGATTTGCG GATCGAGGAC ATCGATAAGC GACTTCTGAC TCTTCATCAA
AAAATCCAAG CGTTACCCGA AGAACCTGAA TTACCGTTTA GCAATAATGA GCAAGCTATG
CGCCTCTATA ATTTGCTTGT TCAAATGGAT TGTCGTTCAG ATTTGCTAAT ACCTTTAGTA
GAAAAAATTT TTATTGAGCG ACCTAAATTG ACGCTCAGAA ATATGATGCC GATAGTGTTG
GAATGGTATG AAAATGGAAA AGAACAGCCT ACTAATGCGC CCAAACCCGC CAAGGCTGCT
TTAGTTAAAC GCACTGATTG GAACACGTTG GAAAGTGATG ACTTAAGGTT TATCTACTCT
CAGGTAGGAA AATCAGAAAG TATTTACGAA GCGCTTAAAG ATAATGGGCT TGTCTTAGAC
CTAAAAAAGG TTAATTGA
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| Protein sequence | MSLPSEYVTA VYQDTGNGSY KGNPFIEALP PIMEIKQLKE GLEGKVDFSL EYLREKPRQR
AHMVASLLDD FFQPLSQHVL LEERISIMIR RGYVSRNLQD GSLNQHLQNG YERVMSGSLQ
SYKFRNVLTT ATCLSLIGCS GSGKSSTLDR ILATYPQVIY HEKHNFFQLS YLKIECPNNG
SQQSLCLNFF REVDKRLGTK YESDYGGKRH GVPTLLALMS QVANQRAIGV LVIDEIQRLK
IRKAVGREQM LEFFVELVNT VGIPVILVGT PKARPLFEIE LQSARRTTGI GSLYWQPMPQ
YPDNPAERSE WEAFTNKLWR YQWLTRRDEV LTDEIRDCWY ELSQGVLDIV VKLFVLAQLR
AIASKLERIT VKVLRSVYET ELKPVHPMLH AIRRGNPNLI AKYSDLRIED IDKRLLTLHQ
KIQALPEEPE LPFSNNEQAM RLYNLLVQMD CRSDLLIPLV EKIFIERPKL TLRNMMPIVL
EWYENGKEQP TNAPKPAKAA LVKRTDWNTL ESDDLRFIYS QVGKSESIYE ALKDNGLVLD
LKKVN
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