| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3766 |
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| Symbol | |
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| ID | 4920758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4484513 |
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| End bp | 4487566 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165392 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001095891 |
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| Protein GI | 127514694 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACCT CGGTAATACG CTTCTCCCTC ACCCAGCGCC TGTTTGTGCT GATCGTCGCC
GCCATCTTGA TGGCCGCCGG CGGCAAGGCC TGGCTGGCGA TCCCCTTAGA TGCCTTTCCC
GATATCTCGC CCACCCAGGT GAAGATCATC CTCAAGGCGC CGGGCATGAC GCCCGAAGAG
ATAGAGGCGC AGATCACTGT GCCCATAGAG ACAGAGCTGC TGGGGATCCC CAATCAGGCG
ATCCTACGCT CGACCACCAA GTACGCCATC AGTGACATCA CCCTGGATTT CGCCGAAGGC
ACAGATATCT ACTGGGCGAG GCAGCAGGTG AGCGAACGCC TGGCCGCCGT GTGGGACAGC
TTCCCCGAAG GGGTCTCCGG CGGTGTTGCT CCCATGAGTA CTCCCTTGAG CGAGATCTTC
ATGTTCTCCC TGGAAAACCC CAACCTGTCG CTGATGGAAC GCAGGCAGCT ACTAGAATGG
GAGGTGCGTC CTTTGCTGCG CACAGTGCCC GGGGTGGCCG ATGTCAACAT TCTCGGTGGC
TATGCCAAGA GCTTCAGCAT CAGCCCCAAC CCGGCGGCCA TGGCGGCGGC CGGCATAGGC
TTTGCGGATC TGCAGCAGGC GATCAAGGAC AACAACCACA ACGAGGGCGC AGGTAAACTC
ACCATAGGCA CTGACACCAT TATCGTGCGC GCCGAGGGCC GCATCGACGA TATCGACGAG
CTGGGACAAC TCGTGGTGAA GGCCGACGAT GCCAAGGTCT ATCGCCTTAA GGATCTGGCC
GAGATCCAGA TAGGTCACCT GGCGCGCTAC GGCGCGGTCA CCAAGGATGG TGATGAGACC
GCCGAGGCGT TGATCATCGC CCTGAAAGAC ACTAATACGG CGCAAGTTGT CGACGGCATT
AAGCAGAAGC TAGCGCAGAT CCAGACCAGC CTGCCGGAGG GCAGCGTGAT CAACACCTTC
TACGATCGCG CCAACCTGAT CAACACCGCC ATAGACACCA TCTCCAGCGC CCTCTTCGAG
GCGGTGCTCT TGGTGATCGT GCTGTTGGCG CTATTTCTGG GCAATGTGCG CGCCGCTTTG
GTGGTGTCCC TGTCGCTGCC GCTGGCGGCT CTGATGACCT TCCTGCTGAT GGATCTGTTC
GACCTGTCGG CCAACCTGAT GAGCCTGGGC GGCCTGGTGA TCGCCATCGG CATGTTGGTG
GACTCCTCTG TGGTGGTGGT CGAAAACATG GTCAATCAGA TCGCCTCCAA ACAGCGACTG
CCGCGCCTGC ACCTGATCTT CCGCGCCACC AAGGATGTCG CCATCCCTGT GGTCTCGGGC
ACCATCATCG TCATCATAGT CTTCTCGCCC CTGCTGAGCC TCACCGGCCT GGAGGGCAAA
CTATTTACCC CGGTGGCGGT CACAATAGTG TTCGCCATGC TCTCCTCCCT GGTGCTGGCG
CTCACCGTCA TCCCTGTGAT CGCCTCCTAT CTGGTGAACG AGAAGGCGGC CCAGGAGCCC
AGGGCGATAG AGAAGCTCAA GGCCGCCTAC CTTGGCAGCC TGAAACGCAC CTTCGAGGCG
AAGAAAGGCT TTATGCTCAC CGCCTTCAGC CTGTTGATCG TCAGCCTTGG GCTGTTTAGC
CTGGTGGGCA AGACCTTCAT GCCCACCCTG GATGAGGGCG ATATCATTTT GCAGCTGGAG
AAGTCACCCT CTATCTCGCT GGAGGCCTCC ATCGCCATCG ACAAACAGAT ACAGCAGACC
CTGCTGAGCA AGGTGCCTGA GATAAAACAG ATGGTCGCCC GCACCGGCGC CGACGAGATA
GGCCTGGATC CTATGGGGCT GAACGAGACG GACGTGTTTC TCGAGCTGGC GCCGCGCAGC
GAGTGGCGCT TCGATACCAA GGCAGAGCTT ATCGAGGCGA TTCGCGGCGA GCTGCTGCAA
TACGCCGGGG TTAACTTTAA CTTCACCCAG CCGATCCAGA TGCGGGTCTC CGAGATGTTG
ACCGGCAGCA TAGGCGATGT GGCCATCAAG GTGTTCGGCA CAGATATCGA CACCCTGGGC
ACTCTGACCG GCGAGATCCA GCAACTGGTG AGCGCCACAA ACGGCAGCGT AGATGTGAAG
ATGTCGCTTA TCGAGGGCAG CCCCTTCATC AACCTCACCC TGGATAACGA GCTGGCGAGA
GGCTTCGGCA TGAGCACCAT GGAGTTTGCC CGCTACCTCA AGAGCCAACT CGAAGGGGTG
GCGGTGACCG AGGTGCTGCA GGGCAAGAAG CGCACCCCAG TGCTGATCGC CAGCGGCGAG
GGCAAGCTTG GCAGCATCAA CGAGCTTAAG CAACAGCTGC TGGTGATGCC GGATCACTCC
CTCAGGCGCC TGACCGATGT GGCCAAGCTC AGCTATAAGG AGGGCCCGAT ACTGATCGAG
CGGGAACAGG GGGATCGCTT CTCGGTGATC ACCACCAATG TCGAGGGACG GGATATCGTT
GGCTTCGTCG AAGAGCTTAA CGCCAAGATA GGCGAGCAGA TCAAGCTGCC GGCCGGCTAC
AGCGTCAGCT TCGGCGGCGA GTTTGAGAAT CAGCAGCGCG CCACCAACAA CCTGCTGCTG
GTGATCCCCA TCGCCATGGC GCTGATCACC CTGATCCTCT TCACCACCTT CGGCTCCCTC
TCCAAGGCTG GGCTGATCCT GGCCAACGTG CCCTTCGCCA TGATGGGCGG CATCGTCAGC
CTCTACCTGT CGGGGGAATA CCTGTCGGTC CCCGCGTCGG TGGGCTTCAT CGCCCTCCTG
GGGGTGGCCG TGCTCAATGG CGTGGTGATG GTCAGCTACT ATGAGCAGAC CCGTCACCTG
TTTAGCGACC TCTTGACCCG GGTGGAACAG GGCGCCATGC GCCGCCTGCG CCCCATCCTG
ATGACGGCCA CCACCGCCAT GTTTGGCCTG ATGCCGCTGG TGTTTGCCAC CGGCCCTGGT
GCCGAGATCC AGAAACCCCT GGCCATAGTG GTGATAGGCG GCCTGCTGAC CTCCACCATC
ACCACCCTCT ACCTGTTGCC TATCCTCTAC TACTGGCTGG AGAAACGCCG ATGA
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| Protein sequence | MLTSVIRFSL TQRLFVLIVA AILMAAGGKA WLAIPLDAFP DISPTQVKII LKAPGMTPEE
IEAQITVPIE TELLGIPNQA ILRSTTKYAI SDITLDFAEG TDIYWARQQV SERLAAVWDS
FPEGVSGGVA PMSTPLSEIF MFSLENPNLS LMERRQLLEW EVRPLLRTVP GVADVNILGG
YAKSFSISPN PAAMAAAGIG FADLQQAIKD NNHNEGAGKL TIGTDTIIVR AEGRIDDIDE
LGQLVVKADD AKVYRLKDLA EIQIGHLARY GAVTKDGDET AEALIIALKD TNTAQVVDGI
KQKLAQIQTS LPEGSVINTF YDRANLINTA IDTISSALFE AVLLVIVLLA LFLGNVRAAL
VVSLSLPLAA LMTFLLMDLF DLSANLMSLG GLVIAIGMLV DSSVVVVENM VNQIASKQRL
PRLHLIFRAT KDVAIPVVSG TIIVIIVFSP LLSLTGLEGK LFTPVAVTIV FAMLSSLVLA
LTVIPVIASY LVNEKAAQEP RAIEKLKAAY LGSLKRTFEA KKGFMLTAFS LLIVSLGLFS
LVGKTFMPTL DEGDIILQLE KSPSISLEAS IAIDKQIQQT LLSKVPEIKQ MVARTGADEI
GLDPMGLNET DVFLELAPRS EWRFDTKAEL IEAIRGELLQ YAGVNFNFTQ PIQMRVSEML
TGSIGDVAIK VFGTDIDTLG TLTGEIQQLV SATNGSVDVK MSLIEGSPFI NLTLDNELAR
GFGMSTMEFA RYLKSQLEGV AVTEVLQGKK RTPVLIASGE GKLGSINELK QQLLVMPDHS
LRRLTDVAKL SYKEGPILIE REQGDRFSVI TTNVEGRDIV GFVEELNAKI GEQIKLPAGY
SVSFGGEFEN QQRATNNLLL VIPIAMALIT LILFTTFGSL SKAGLILANV PFAMMGGIVS
LYLSGEYLSV PASVGFIALL GVAVLNGVVM VSYYEQTRHL FSDLLTRVEQ GAMRRLRPIL
MTATTAMFGL MPLVFATGPG AEIQKPLAIV VIGGLLTSTI TTLYLLPILY YWLEKRR
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