| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3745 |
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| Symbol | |
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| ID | 4920920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4460984 |
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| End bp | 4463200 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165371 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001095870 |
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| Protein GI | 127514673 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3408] Glycogen debranching enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00662603 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000773633 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGCGTC TGCCTGCGCT ATCTGTTCGC CGCCTCCTGC TGCTTTCTCT GTCTCTTCTC
TGCTCTCTGC CCTCTGTTTC TGTAGCGCAG GCCAGCGAGT ATCGGGATCT GCTCAACTAC
CGGGGAACCC CAAGTAATAT GGAGCAGCGG GATCCACAGG GCAATCTGAC GATTCCCGCC
GTCTACATGG ACCAGGGCGC TTGGCATGGT TTTCATCTGC CGGACTCGCC CGCCTACTAT
GGAGGCTTCA CTGGGCCGCT GTTTATCGCC CAGGAGTACA GCCTGCATCT GAGCGATAGT
CTGCAGAAAC TGCAGCTGTT TTCCGGTGAG TCTGGTCAGA GTGTGGATCT GGCCAAGGCG
GAGCAGGTTG AGATCTACAG CGAGCCCTGG GGGCTGGTGC AGCGCTTTCG TTTCAAGGAT
CTTGAGCTCT CCACCACCTT GGAATATAGC GATAATCGCA CCGCCATCGT CTCGACTAGG
CTGATTAACC TGAGCGACAA GCCGGGTTCC TGGCGCCTGA GTTGGTCGGG CAGCCCCTTC
GCCACTCATC CTAAGCTGAA GCAGTATCGC TTGGTCGATA AACGGCTGCT GAGCGAAGAC
GCCGTCACCT GGCAGTTTAC CCCCATAGAT CAGACCTGGC AGATGCAGCT GGACGATGCC
AGTTATCGGC TGGCGTTTGA GCAGGCAGTA ACCCTATCGG TCGAGGGGCC CCAGGGCTAT
CGCGCCGACA GTGGGCTGTT GACCCTGGCA CCGGGGGAGG CGACAGTACT ACGCGCCGCC
CACCAGTATT TTCATACTCA AGTTGAGGCC AGGCATGCGG CTAAGCTTGA CTGGCCCACA
GTGACAGCGA AGCTTGCGGT TAATCGGTCC CGTTGGCAGC AGCGGCTGGA TAAGCTAGTA
CGCGGCGGCG AGCTTCCGGC CAGGCGCCTG GCTGCTAAGA GCATGATGAC CCTGCTGCAC
AACTGGCGTA GCCCGGCGGG CGCCTTGTTG CATGATGCCG TCACGCCATC TGTGACCTAT
AAGTGGTTCA ACGGTGTCTG GGCCTGGGAC AGCTGGAAAC AGGCGGTGGC GCTGGCGCAG
TTCGATGTGG CGCTGGCCGA GTTGAACGTG CTGGCGATGT TTGATTATCA GTTCGATGCC
AAGGACCCGC TGCGCCCCGA GGATGCGGGT AACCTGCCCG ACGCCATCTT CTATAACCCC
GATGCCAGCC GCGGCGGCAA GGGGGGTAAC TGGAATGAGC GTAACGGCAA GCCACCATTG
GCGGCTTGGG CCGTATGGCA GATCTACCAG CAGAGCCAGG ATAAGGCGTT GATTACCAGG
CTCTACCCTA AGCTGGTCGC CTACCATGAA TGGTGGTATC GCAATCGAGA CCATAACCAC
AACGGCCTGG CGGAATATGG CGCCAATCGA CATCCTCGCC ATGGTGAGCC GGGTGAGCCG
GGTGAGCCGG GTGAGCCGGA CAGGGAGGCG GTGATCGAGG CGGCGGCCTG GGAGTCGGGC
ATGGACAACG CGCCGCGCTT CGACATGGGC GATGAGCTCC AGGTGCTGGA AAATTATGAT
GCTAAGGGGC GACTGCTGGG TTACTCCATC TCCCAGGAGT CAGTGGATCT CAACAGCTAC
CTGTATGCGG AGAAGGGCTA TCTGGCGCAG ATGGCCGAGT TACTGGACTT GGATAGCGAG
GCGGCGGTTT GGCGTGAGCA GGCAGCTCGC CTTGGACAGC TGATCCGCAG CGAGTTTTTC
GATGAGGAGA GTGGCTTCTT CTACGACAGA CGCTTAGCGG GTGAGCGCTC ACGTTTGATG
ATCGCCGAGG GTAAGGGGGT CGAGGGCTGG TTGCCGCTGT GGGCCGGCGC CGCCAGTCAG
GCTCAGGCGG AGCAGATGAT CGCCACTCAG CTCAATGCTT CGAACTTCGG GACTAAACTG
CCCTTTCCTA CTGTGAGCGC CGACAATTCG GCCTTTGCCC CGAGGCGTTA CTGGCGTGGC
CCCGTCTGGC TGGATCAGGC GCTGTTTGGC CTGCAGGGAG TCTCCCGCTA TGGTCACGAC
GAGCTGGCGC GGCGCCTCGC CACTCGACTG GTGAATGAGG CCGACGGTGT ACTGGGTGAT
GGGCCCATAC GGGAAAACTA TGATCCTCTT ACCGGAGACG GGCTGCACTG CACCAACTTT
AGCTGGTCAG CCTCTGTGCT GCTGCTCATC TATCGCAGCT GGCTCAGCAC TGATTGA
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| Protein sequence | MTRLPALSVR RLLLLSLSLL CSLPSVSVAQ ASEYRDLLNY RGTPSNMEQR DPQGNLTIPA
VYMDQGAWHG FHLPDSPAYY GGFTGPLFIA QEYSLHLSDS LQKLQLFSGE SGQSVDLAKA
EQVEIYSEPW GLVQRFRFKD LELSTTLEYS DNRTAIVSTR LINLSDKPGS WRLSWSGSPF
ATHPKLKQYR LVDKRLLSED AVTWQFTPID QTWQMQLDDA SYRLAFEQAV TLSVEGPQGY
RADSGLLTLA PGEATVLRAA HQYFHTQVEA RHAAKLDWPT VTAKLAVNRS RWQQRLDKLV
RGGELPARRL AAKSMMTLLH NWRSPAGALL HDAVTPSVTY KWFNGVWAWD SWKQAVALAQ
FDVALAELNV LAMFDYQFDA KDPLRPEDAG NLPDAIFYNP DASRGGKGGN WNERNGKPPL
AAWAVWQIYQ QSQDKALITR LYPKLVAYHE WWYRNRDHNH NGLAEYGANR HPRHGEPGEP
GEPGEPDREA VIEAAAWESG MDNAPRFDMG DELQVLENYD AKGRLLGYSI SQESVDLNSY
LYAEKGYLAQ MAELLDLDSE AAVWREQAAR LGQLIRSEFF DEESGFFYDR RLAGERSRLM
IAEGKGVEGW LPLWAGAASQ AQAEQMIATQ LNASNFGTKL PFPTVSADNS AFAPRRYWRG
PVWLDQALFG LQGVSRYGHD ELARRLATRL VNEADGVLGD GPIRENYDPL TGDGLHCTNF
SWSASVLLLI YRSWLSTD
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