| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3708 |
|---|
| Symbol | |
|---|
| ID | 4921220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4412666 |
|---|
| End bp | 4413319 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640165330 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001095833 |
|---|
| Protein GI | 127514636 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.59565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCC GCGATAAAAT CGTCCACGCC GCCCTTGCCC TGTTTAACGA GCATGGTGAG
CGCGCCATCA CCACCAACCA TATTGCCGCG CATCTGGGGA TCAGCCCGGG TAACCTCTAC
TACCATTTTC GTAATAAAGA AGACATCATC CGCTCCATCT TCAGCCTCTA TGAACAGCAC
TTGGAGACAG GCTTTCAGCC CTATGAAGGC AAGAAGGTCG ATGTCGACCT CCTGATCGGC
TACTTCGACG CCCTCTTCTA CACCCTGTGG CAGTTCCGCT TCATGTACGC CAACCTGGTG
ATCATCCTCA GCCGCGACGA GGTGCTCAAT AAGCAGTATA CGGTCACCCA TGAGCAGGTA
CTCAAGCGAG CCACCAGTAT CCTTACCCAG CTAAAACAGG ATGGCGTATT GGTGATCGAC
GACGCCGAGA TCACGCCACT GGCCGACACC ATACGCATGG TGGCCTGCTT CTGGATCAGC
AATCAGCTCA CCCACTCTGA GGCCACCCAG ATCACTAAGA CCTCCCTCTA CGAGGGGCTA
CTGCGAGTGT TGATGATCTT CAAGGCCTAC GCCAGTGAGT CCGCCAGACC CACCTTCATC
AGGCTGGAGC AGCACTACCA GGCCCTGGCT AAGGCGGAAC AGGAAGAAGA CTAA
|
|---|
| Protein sequence | MKTRDKIVHA ALALFNEHGE RAITTNHIAA HLGISPGNLY YHFRNKEDII RSIFSLYEQH
LETGFQPYEG KKVDVDLLIG YFDALFYTLW QFRFMYANLV IILSRDEVLN KQYTVTHEQV
LKRATSILTQ LKQDGVLVID DAEITPLADT IRMVACFWIS NQLTHSEATQ ITKTSLYEGL
LRVLMIFKAY ASESARPTFI RLEQHYQALA KAEQEED
|
|---|
| |