| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3705 |
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| Symbol | |
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| ID | 4921217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4409367 |
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| End bp | 4410296 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165327 |
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| Product | dTDP-4-dehydrorhamnose reductase |
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| Protein accession | YP_001095830 |
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| Protein GI | 127514633 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
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| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.146847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACCGA TATTGGTGAT CGGTCGTCAT GGGCAGGTTT CCCAGGCGCT CAACGCGACT
CAGCCAGATT GCTACCAGGT GGACTATCTG GGCCGAGAGG CGCTGGATGT CCGCGACAGC
CAGGCGATTA AGAGGTTATT AGAGCAGCAA GGCTATGGAC TGGTTATCAA CGCCAGTGGC
TATACCCAAG TCGACGCCGC CGAGACAGAC AGCCAGGCCG CCTTTGCCCT CAATCACCTG
GCGGTAAAGG CATTAGCCGA GCACTGCGGT AAACGTAGCA TCCGGCTTAT CCACCTTTCC
AGCGACTATG TCTATGATGG GGTCTTTGAT GGGGTCTTCG ATGGGGTATT TGATGAGGCT
TTTAAGGGGG AGCTCGATAA ACAACATTGC CAGCCCTATC GCCCAACGGA TACGCCTAAC
CCGCTGAGTC GCTACGGCGA ATCTAAGTGG CACGGCGAGC AGGCAGCGCT GGAATATGGC
CTGGGCCATG CCTTCATAGT GCGCACTTCT TGGCTCTACT CCCCCTTTGG CCATAACTTT
GTCAAGACCA TGCTGACTCT GATGCGCCAG GGTAAACCGC TTAAGATAGT CGACGATCAA
TGGGGCACGC CAACTTCGGC CATCACCCTT GGACAATTTA TCTGGCAACT CATTCAAGTG
ACAAAGCCAG AACCCATCTA CCACTGGAGC GACCTCGGCG TCACCAGCTG GTATGAGTTT
GCACGTCAGA TATCGGATAG CGCCTATGCA TTGGGGCTTC TCGATAAGCC AGCAAACATC
AGCCCCATTA GCACCCAGGA ATATGGCGCC CCAGCGCCTC GCCCGCACTA CAGCGCCCTG
GATACCAGTA GCTCCCAGGC TATTTTGCCC GCAAAACGCT GGCAGGATAA TCTCATCCAG
GTACTGCAAC AACTGGCGAA AGAGGGCTGA
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| Protein sequence | MKPILVIGRH GQVSQALNAT QPDCYQVDYL GREALDVRDS QAIKRLLEQQ GYGLVINASG
YTQVDAAETD SQAAFALNHL AVKALAEHCG KRSIRLIHLS SDYVYDGVFD GVFDGVFDEA
FKGELDKQHC QPYRPTDTPN PLSRYGESKW HGEQAALEYG LGHAFIVRTS WLYSPFGHNF
VKTMLTLMRQ GKPLKIVDDQ WGTPTSAITL GQFIWQLIQV TKPEPIYHWS DLGVTSWYEF
ARQISDSAYA LGLLDKPANI SPISTQEYGA PAPRPHYSAL DTSSSQAILP AKRWQDNLIQ
VLQQLAKEG
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