| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3655 |
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| Symbol | |
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| ID | 4921877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4355955 |
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| End bp | 4356827 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640165277 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095780 |
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| Protein GI | 127514583 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.781642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC CCATCTGGTT ACGCAGCTTC TGCACCTTGG TGGAACTGGG GCATTTCACC
CGCACCGCCG AGCGCCTGTA TATGACTCAG TCTGGTGTCA GCCAGCATGT GCGCAAGCTG
GAGGAGCAGC TTGATACCCA GCTGCTACTG AGAGAAGGCA AGAAATTTTC CCTGACCCAC
GCCGGGCGTC AGCTATACCA GCAGGGGCAG GCGATACTGC AATCCCTGGC TCAGCTTGAG
CAGGGAATCA AACAAGACCC GCCCTTTGCC GGAGAGGTAC GCCTGATGTC ACCCGGCAGT
GTCGGCCTCA AGCTCTATGG TGAGCTGCTT GAGCTGCAAT GCGCCCACCC CGAGTTGTCG
CTGGATTATC GTTTCGCCTC CAACGCCGGG GTAGAGAGCG CCATCGCCGC CATGGAGGCG
GATATCGGCC TGATGACCCG CCAGCCAGAG CTGTCCGAGG TGCAGGCCGA GGCGATTGCC
GAGGAGCCGC TACTCCTGGT GACGCCAGCT AGCCAAACGT CTCTCTCCTG GGAGGCCTTG
CTACAGCTGG GCTTTATCGA TCATCCCGAT GGCGCCCACC ATGCCAAGTT GCTGCTGGGG
GCTAACTATC CTGAGTTCGA GCACAGTGAT CAGCTGCCTA ACCGGGGCTT CTCGAATCAG
ATAGGTTTGA TCTTAGAGCC GGTGAGCCGA GGCTTGGGCT TTAGCGTCTT GCCCGCCTAT
GCGGTGGAGG CCTTTGCCCG TCAGGATAAG ATTACCGCTC ATCGGCTGCC GGTAGCCGTC
AGCGAGACTA TCTATCTTTG CCGCCGACGT CAGGCCGTGC TGCCGAGGCG AGTCGATTCG
CTCAGCGAGG CCATTAAGGC CTGCCTGGCT TAG
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| Protein sequence | MMNPIWLRSF CTLVELGHFT RTAERLYMTQ SGVSQHVRKL EEQLDTQLLL REGKKFSLTH
AGRQLYQQGQ AILQSLAQLE QGIKQDPPFA GEVRLMSPGS VGLKLYGELL ELQCAHPELS
LDYRFASNAG VESAIAAMEA DIGLMTRQPE LSEVQAEAIA EEPLLLVTPA SQTSLSWEAL
LQLGFIDHPD GAHHAKLLLG ANYPEFEHSD QLPNRGFSNQ IGLILEPVSR GLGFSVLPAY
AVEAFARQDK ITAHRLPVAV SETIYLCRRR QAVLPRRVDS LSEAIKACLA
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