Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3624 |
Symbol | |
ID | 4922410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4322361 |
End bp | 4324166 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640165246 |
Product | hypothetical protein |
Protein accession | YP_001095749 |
Protein GI | 127514552 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATTAA CTCACCTTAG CTCTCTGCTG CTCGGTACCT GTCTACTCAG TGCCTGCGGC GGCTCCAATA ACGATTCAGA TACCCCAACC GACGGCGGCA CGCCGCCTCC CACGAGTTTC GACCATAGTG TTGTCGGCAC TGTGGTGTAC CAGGGCGCGG TAGCCGGCGC CGAGGTCTGT GTGGATCTCA ACCAAAATGC CAGCTGCGAC AGCGATGAAC CCAGCGCCAT TGCGGATGCC GAAGGTAAAT ACCAGATAGA CTGGAGCAGT GACGTCGAAA TGCCCATCTA TGATCTGATC GCCAACTGGC AACAGGCAGC AGAAGCCAGC AGCAAGCCAG CCCTGCTCAA AGCAGCTTTT CGTCCGGAAT CTCTAAACAC CAATGCCTCA AGTACGGCAG CCGAATCCAC TAGTACCCAG GCCGTGATCT CCATGGAGGG AGTCGGCAAG TTGGTTGCCC TGCAGGAACA CGGCGGTGAG ATCAACCCTA TGACTCATCT GGAGTATCAG CGCGTCGCCC GCATGCGCGC CGCCGGTACC ACCTCCCTTG ATATCGCAAC CCAGCGCACT CTGCTCGCCG CTCTATTGCT GACTATCTAC GATCGCGACG GCAATCCCTA TAAACTGAGC ACCGAGCAAT CCCTCGCCCC TGAATTTATC GACACCTACC GACTGCATCG TCATCTGGAA GCCTTGATCG GCGATCAGCT CAGCGATGTG CTGGCCGTGG ATGACATCAT GTCAACCATC CGAGACCAGC TAAAGACCCT GGTAGAAGAG AGTGGCATGA GCACCGAGGA TTATTTAGCC AGCGACCCCA TGGCGGTGCG CTTCCTGGTC AACAATGCAC TGATCGCCGA AGAGTATATC GAGACACCAA TCGATGCGAA GATCATGTCG GACGCCGACT GGCAGGTGAT CAACAGCCAC TTCCTTGAGG ACGACCAGCT GCATAGCAAC TTCACCCTGG CCCCCGCCAC ACTACGGAGC CTCTTTACCC TCACTTATGG CACGCCCGAT CTCACCTTCG TAGGTTCTAT CGTCGAGGGC AAGGTCAATG GTCGGGTATT CGATGATCGC GACGGAACTG ACACTCCAGA GGAGTGTTGG AACAAGGAGC TAAAACATTG GGTTATCGAA GGCGACAAAG ACTATCAGCC GCCCGAAATT AAGTACGAAA ACAACACACT CCAGACTGTG TACAGTGGCA CCTCGGTACC CATCACAATC GAATTCACTA AATACTCAGG CACTGGTGAG GAGTGGCAGG CCATTCTCAG CACCACGCCA CCGGCACTCA AGCTGGCCGA ACTCAACTGG CCAAGCCAAG TGTACCGCTA CCGTGGAAAA CAGGCAGATG ACGTGATGTG CCGTGTACGG GGTGAGTTCG CCACCTGGCC CATGCCGAGC CATCAAGATC CAGAGCTCTT GACCACGGCG GATGTCGCTC GCCTCTTCTG GCCAGCCTTC TACCCAGACG ATGTAGTGGT CGATGAAGAG AACAAAACCA TCAAGCTCAA CATCACGGGG GAGGTCACGA CTTATCAATG GTCGCTGAGC ACCAGTCCAA GCGATGAGCC TGTTCTTCGT CTGAAGCAGA TAGACCTGCC AGCCGCCTAT GCCGAATTTG TGTCTGTCGA TAACTATCTG ATCCAAGGCG ATAAGCTCAT CGAAGTCAGT ATCTACGAGG CCACCGACTA CAGCGGCAAG CTCGGCGATT ACCTCAGCAT CAGCTTCGAC GGCAATGAAG ACAACTTCAA CCAGCGCTTC TACAAACACC TAGAGGCGAT CGTCAAGGGG CAATAG
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Protein sequence | MRLTHLSSLL LGTCLLSACG GSNNDSDTPT DGGTPPPTSF DHSVVGTVVY QGAVAGAEVC VDLNQNASCD SDEPSAIADA EGKYQIDWSS DVEMPIYDLI ANWQQAAEAS SKPALLKAAF RPESLNTNAS STAAESTSTQ AVISMEGVGK LVALQEHGGE INPMTHLEYQ RVARMRAAGT TSLDIATQRT LLAALLLTIY DRDGNPYKLS TEQSLAPEFI DTYRLHRHLE ALIGDQLSDV LAVDDIMSTI RDQLKTLVEE SGMSTEDYLA SDPMAVRFLV NNALIAEEYI ETPIDAKIMS DADWQVINSH FLEDDQLHSN FTLAPATLRS LFTLTYGTPD LTFVGSIVEG KVNGRVFDDR DGTDTPEECW NKELKHWVIE GDKDYQPPEI KYENNTLQTV YSGTSVPITI EFTKYSGTGE EWQAILSTTP PALKLAELNW PSQVYRYRGK QADDVMCRVR GEFATWPMPS HQDPELLTTA DVARLFWPAF YPDDVVVDEE NKTIKLNITG EVTTYQWSLS TSPSDEPVLR LKQIDLPAAY AEFVSVDNYL IQGDKLIEVS IYEATDYSGK LGDYLSISFD GNEDNFNQRF YKHLEAIVKG Q
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