| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3620 |
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| Symbol | |
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| ID | 4922406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4317974 |
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| End bp | 4318891 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165242 |
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| Product | general secretion pathway protein C |
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| Protein accession | YP_001095745 |
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| Protein GI | 127514548 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00688552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTAT TAGACAAAGT AATATCTAAG GCCTCTGCCG TGCCGCAGAA GCCTCTGAGT
TCGGCCGTAT TCTGGCTCGG TTTGATTACC GCTATCTATC TTTTGGCGCA GATCACATGG
AAGTTGGTGC CCGTCGCAGA AACCCCACAA AAATGGCAGG CGACCCCTGT CTCCAGCAGC
CAGTCATCGT CTCAGGTGAA TGTCTCTACG CTGCAGGAAT TAGCCCTCTT CGGTAAGACG
GATCCTAATT CGGATAAGCC TAAGCCCGTG GTGGAAGAGA AGATCACCGA TGCCCCTAAG
ACCTCGCTGT CGATTCAGTT GACCGGCGTG GTGGCCTCTA CTGCAGAGCA GCATGGGCTG
GCTGTGATCG AATCCAGCGG CAGCCAGAAC ACCTATAGCC TGGGCGACAA GATCAAGGGC
ACCTCAGCCT CGCTTAAAGA GGTGTATGCC GATCGCATCA TCATCTCCAA CAGTGGTCGC
TACGAGACAC TGATGCTCGA CGGCCTCAAG TATGAGACCC AGGGCGCCGC CAATAGCCAG
TTGCAAGAGG CGCGTTCCTC TCGCGATGTA CGCACCATAG ACAAACGTAG CAACAGCGCC
GTCTCTAAAG AGCTGGAAGA GTCGCGCGAC GCCCTGCTGG AAGACCCCAG CAAGATCACA
GATTACCTTG CCATCTCACC GGTCAATGTC GGCGGCGAGC TGCAGGGATA TCGCCTGAAT
CCGGGCAAGG ACAGACAATT ATTTGAACAG GCTGGCTTTA AGGCCAACGA TTTAGCAAAA
TCAATGAACG GCTATGATCT GACTGATATG AGCCAAGCAT TGGAAGTGAT GGCGCAGTTG
CCAGAATTGA CCGAAATTTC TCTGATGGTT GAAAGAGAGG GTCAGCTGGT TGAGATCATG
TTTAGTTTGC CGCAATAA
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| Protein sequence | MDLLDKVISK ASAVPQKPLS SAVFWLGLIT AIYLLAQITW KLVPVAETPQ KWQATPVSSS
QSSSQVNVST LQELALFGKT DPNSDKPKPV VEEKITDAPK TSLSIQLTGV VASTAEQHGL
AVIESSGSQN TYSLGDKIKG TSASLKEVYA DRIIISNSGR YETLMLDGLK YETQGAANSQ
LQEARSSRDV RTIDKRSNSA VSKELEESRD ALLEDPSKIT DYLAISPVNV GGELQGYRLN
PGKDRQLFEQ AGFKANDLAK SMNGYDLTDM SQALEVMAQL PELTEISLMV EREGQLVEIM
FSLPQ
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