| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3615 |
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| Symbol | |
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| ID | 4922401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4311936 |
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| End bp | 4312514 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165237 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_001095740 |
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| Protein GI | 127514543 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTGGCG TCCGCCAATT CGGTTTCACC CTGCTAGAGG TCCTGCTGGT CGTCTTGCTG
ATGGGATTGG CTGCCGCCGC GGTGACTTAT ACAACGAGCG GCGCCGACCA ACACAAGGCG
CTGGAGCGCA CGGCGCGTCA GTTTATGGCG GCCACCGAGC TGGTGTTGGA TGAGACCATA
CTCAGCGGCC ATTTCATCGG CATAGTCATC GACAAGCAGC GCTACGAGTT TGTCGTCTAC
GATGAGGGCA AATGGAAGCC GCTGCAGCAA GATCGTCTGC TGGCGGCCAA AGAGATGGAT
CCAGGTGTCG AGATGCATCT GGTGCTCGAC GGTCTGCCCC TGACTCAGGA AGATGAAGAG
GATGAATCCT GGTTCGATGA GCCGCTTATC GAGCGTAGCG AAGATGAAAA GAAAAAGTTT
CCCGAACCTC AGGTGCTGCT GTTTCCCAGC GGCGAGATGA GCGTCTTCGA GCTGACCTTC
GTCGGTAAAG ATGAGCGTGG CCAGGAGATT GAGGCCCTGG TGGTTGGCGA TGCCTTAGGC
CGCCTGACCC TGGGCAGAAA GGATGGATTC GATGAGTAA
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| Protein sequence | MRGVRQFGFT LLEVLLVVLL MGLAAAAVTY TTSGADQHKA LERTARQFMA ATELVLDETI
LSGHFIGIVI DKQRYEFVVY DEGKWKPLQQ DRLLAAKEMD PGVEMHLVLD GLPLTQEDEE
DESWFDEPLI ERSEDEKKKF PEPQVLLFPS GEMSVFELTF VGKDERGQEI EALVVGDALG
RLTLGRKDGF DE
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