| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3592 |
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| Symbol | |
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| ID | 4922560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4289980 |
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| End bp | 4291398 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640165214 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001095717 |
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| Protein GI | 127514520 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0572167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTCAGCG ATATCGAACT GGTTAGCCAA TTTTCGCACG ACCTGGGTGA AGACTACCGT
GTGGCCAAGA GCTATGTGCG TGACGTGCCG ACCCAGGCAC TGCTGCACGT GCGTAGCTTC
ACCCATAGAT TGACCGATAA GCTGGCGGCC TCCCAGCAGC TGGTCTTCGA CAGCCCCAAC
CTCTACGACC GAATCGAACT GCTCAACCGT CAGCGGGTGA TCAACGTGCG TCTGACCCGC
GCCTTGCACA GGCTGCGCAG CGACGGCAAC CGTGGGGCCC ATCCCGAGAA ATATCACCTC
ACCGCCGAGG CGCTCGAGCA GCTGGCCGAG AAGGCTATCG AACGTCTGGT CAAGCTGGTG
GAAGATCTCT ATCCGCTGCT CTGCAATGAG CCTGCCCCCG AGTATCGCTT CGAGCCTTTC
GATGCCTTCG CCGGGCGGGA TCTCTGTTAT CGTGCCGTGA TGGAAAACGA TCCTCAGGCG
CAGTATCTGG TGGGCATGTC GCTCAAGACC CGCGCCCTGA TGCAGAAGGA GCAGGAGCAA
GCCCTGCATG ACGAGGCGGA GCAAGAGCTT GACCCTCAGA GCGAGGCCAA CTTCAAGCAG
GCGGCCCACT GGTTTGCCCT AGCGGCGCCC CATCTGCCCG AGGCGAAATA TGAACACGGC
GTCAGCCTGC TGCACGGCTA TGCTGGCAAG GCGGACGTGG CGGCGGGCGA GAGTGCCATC
ATAGCCGCGG CCAAGGCCGG GGTAGTGAAT GCCATGGCCC TGCTGGGCTA TTTCTATTTG
GTCGGTAGTG AGCAGATCAG CATAGATACT CAGCTAGCCT ATCGTTACCT GCAGGCGGCG
GCGGATCGCG AGCAGTCGGA AGCCATGGCT AACCTCGGCG TGCTCTACTA TCAGCAGGCC
AACTATGCCC AGGCGTTTCA CTATATCTCC AGTGCCGCTC AGGCCGGATT CCCCCATGCC
CAGTATCACC TGGCGCTCAT GTTGGCGCGG GGCGAGGGCT GTGAGGCCGA TCCCCTGGCC
AGCGAGCAGT GGATGGCCGA GGCCGCCGAG CAGGGACAAC TCGATGCCAT GCTGCACTGT
GCCCAGCAGA TGCTCAACAA CGAGAATGCC CTGGGCAATG ACTTCTCTCT GGCGGAGCGC
TACCTGAGAG AGGCGGTGAA ATATGGCCAC AGCGTGCCGG CCATGATAGA GCTGAGCATC
GCCCTGGCCG ACGGCATATT GGGACGCATC GACGTGGTGG GCTCGGCGGC GCTGCTGAGG
ATGGCGCGCC AGCGTGGCAA TGAACGCGAA CGTGAGGTGA TAGCCCCACT GTGGGAGTCG
CTGTCTCTGC AGATCGATAA GGTCCTGAGT GTCACCCAAG ACGCCGAGGA GCAGAGAGCC
CTGCAGCGCG CACGGGAGCT GCTGAGCGAT CCCGCCTAA
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| Protein sequence | MLSDIELVSQ FSHDLGEDYR VAKSYVRDVP TQALLHVRSF THRLTDKLAA SQQLVFDSPN
LYDRIELLNR QRVINVRLTR ALHRLRSDGN RGAHPEKYHL TAEALEQLAE KAIERLVKLV
EDLYPLLCNE PAPEYRFEPF DAFAGRDLCY RAVMENDPQA QYLVGMSLKT RALMQKEQEQ
ALHDEAEQEL DPQSEANFKQ AAHWFALAAP HLPEAKYEHG VSLLHGYAGK ADVAAGESAI
IAAAKAGVVN AMALLGYFYL VGSEQISIDT QLAYRYLQAA ADREQSEAMA NLGVLYYQQA
NYAQAFHYIS SAAQAGFPHA QYHLALMLAR GEGCEADPLA SEQWMAEAAE QGQLDAMLHC
AQQMLNNENA LGNDFSLAER YLREAVKYGH SVPAMIELSI ALADGILGRI DVVGSAALLR
MARQRGNERE REVIAPLWES LSLQIDKVLS VTQDAEEQRA LQRARELLSD PA
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