| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3583 |
|---|
| Symbol | |
|---|
| ID | 4922551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4280417 |
|---|
| End bp | 4281052 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640165205 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_001095708 |
|---|
| Protein GI | 127514511 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCTTT GTCCCCTTTG TCATAGTGAT AACCTGGCGT GCTTTCATCG CGATAAGCAC
AGAGCATATG AGATCTGTAA TCAGTGCCAG CTGGTGAGCG TCCCCGACCA GTACCTCCTA
AGCGCCGAAG CCGAGAAGGC GTTTTACGAC CATCACCAAA ACGACAGTAA GGATCAGGGC
TATCGGCGCT TCCTGGGGCG CACCTGGTTA CCCCTGAGTG AGCGATTGAC TAGCGAGCAT
AGAGGGCTGG ATTTTGGCTG TGGCCCGGGG CCGACCATCA GCGTGATGGC GGGCGAGGCG
GGGATTGCCA TGGACAACTA TGATCTCTAC TACTTTCCCG ACGAGCAGCT GCTACAGCAG
CAATATGACT TTATTACCAT GACAGAGGTG ATAGAGCATG TGGCCGATGC CTCGGCCCTG
ATGCAGAGGC TGGATGCCAT GATGAAGCCG GGCAGCTGCC TGGCTGTCAT GACCAAGCGG
GTGCTGGATG AGGCCGCCTT TGCCAACTGG CATTACAAGC AGGATCAGAC CCATATCCGC
TTCTACAGCA CCGCCACCTT CGAGTGGATC GCCAAGCAAT TTAACTGGCG GCTCGAGGTG
ATAGACAAGG ATGTGGTCTT CTTTACTAAA TCCTAA
|
|---|
| Protein sequence | MSLCPLCHSD NLACFHRDKH RAYEICNQCQ LVSVPDQYLL SAEAEKAFYD HHQNDSKDQG
YRRFLGRTWL PLSERLTSEH RGLDFGCGPG PTISVMAGEA GIAMDNYDLY YFPDEQLLQQ
QYDFITMTEV IEHVADASAL MQRLDAMMKP GSCLAVMTKR VLDEAAFANW HYKQDQTHIR
FYSTATFEWI AKQFNWRLEV IDKDVVFFTK S
|
|---|
| |