| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3573 |
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| Symbol | |
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| ID | 4922646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4267334 |
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| End bp | 4269109 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640165195 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001095698 |
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| Protein GI | 127514501 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATAG CTCCACAGAC ACAGGCTTGG TTGTCTGACT CATGGTCTCG TAGTCAGGGC
GCAGGGTTAA GCGAAGCCAA GTTACCGCAA GAATTACGAC TCAACGCCGA GGCGCTCGCC
GAGCGGCATC ACGCCAACAA GCAACTCATC AATCTCACCA AACAGCATGC ATTGCCCCTG
TTTAATCAGA TGATGGCCCA CAGCCAGAGC CGACTGATCC TCTCGGATCG CGACGGCTAT
GTGCTCTGCC ATTGGGGCGT CAGCCGCTAC TCGGATAAGC TGGCCAATGT CGCCCTGGAT
GTGGGGGTCA ATTGGCGTGA GGAGCATAAG GGCACCAACG CCATAGGCAC GGCCCTTACC
GCCAGGCAGA CGGTGGCGGT GATCGGCGAG CAGCACTTCA TCCGCCACCA CAGATTTATG
AGCTGCACCG CCAGCCCCAT CTTCTCCCCA GAGGGGGAAC TGCTCGGCGC CATCGACATC
ACCAGCGAGC AGCAGCGTCA CACCCAGCAG ACCCTGGTGC TCATCGCCAG CCTGGTGCAA
CAGATAGAGA CGGCGCTGCT GTGTCATCTG CCCGGCAGTC ACTACCGCAT CGATCTGGCC
GAGCAGCCGT CGCTGATCAC CTCGGGTTGG CAGGGGATAG TGGTGGCCAA TGTCGATGGC
AAGCTCTTAG GCTGCAACGC CATGGCCAAG CGTCTGCTAC ACAGGCCGCG CATCGGTGAC
GATATCGACC GTCATCTGGG GGCGAGCTGG AACAGCGGCG AGCAGGTGTG TCAGGACCAG
CGCCTGCACC TCAAGACCCA GCAGCTGGTC GAAACCCGGC CCAGCCAGCT GGTGAGCCAG
CAGATAGGCG TGCGCTTTCG CGACCCTAAG CTAGAGCGCG CCTGGCAGCA GGCCAATAAA
GTGGTGGGAC GCAACATTCC TCTGCTGATC TGCGGCGAGA CTGGGGTGGG CAAGGAGCAG
TTTGTGAAGA AGCTCCATGG TCAGAGCACC CGCGCGCAGC GCCCTCTGGT GGCGGTCAAC
TGCGCCGCAC TGCCCGCAGA ACTGGTGGAA TCTGAGCTGT TTGGCTATCA GGCCGGGGCA
TTTACCGGCG CCTCCCGTCA GGGGTTCGAG GGCAAGATAC GTCAGGCCGA TGGCGGCTTT
CTGTTTCTCG ACGAGATAGG CGAGATGCCG CTGGCGACCC AGAGCCGTCT ACTTAGGGTG
CTGCAGGAGC GCGAGGTGGT GCCCGTGGGC GGTAATCGCA GCTACAAGGT GGATATTCAG
GTGGTGGCCG CGACCCACGC GGATCTGCGC CAGCTGGTGA GTGAGGGGGC GTTTAGGGAG
GATCTCTACT ATCGTCTCAA CGGCCTGCAG GTCTCACTGC CGCCCCTGCG TCAGCGCGCG
GATATCGAAC GCATCATTCA CAAGCTGCAT AGGCGCTATC GCCAGGCGCC GCAGCAGCTC
TGCCCTCAGC TACTGAGACG ACTGTTGGCC CACGACTGGC CGGGCAACCT GAGGGAGCTG
GATAACCTGA TGCAGGTGGC CTGTCTGATG GCCGATGGCG ATCCCGAACT TAACTGGCAG
CACCTGCCCG ACACCCTGCA GGCCCAGCTG CAGGGGCCTG AGCAGGCGGG CGAGCAGATG
GCGGCCTGCG AGAGTGAGCT TAGCCTGATG GTCAACGCCA ATATCGTCTC CAGCTTCCAC
AGATTTGAGG GCAATGTCAG TCGCTGTGCC AAACACTTAG GGATCAGCCG CAATACCTTG
TATCGAAAAC TCAAGGCCCT GGGGCTCAAA CCCTGA
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| Protein sequence | MTIAPQTQAW LSDSWSRSQG AGLSEAKLPQ ELRLNAEALA ERHHANKQLI NLTKQHALPL
FNQMMAHSQS RLILSDRDGY VLCHWGVSRY SDKLANVALD VGVNWREEHK GTNAIGTALT
ARQTVAVIGE QHFIRHHRFM SCTASPIFSP EGELLGAIDI TSEQQRHTQQ TLVLIASLVQ
QIETALLCHL PGSHYRIDLA EQPSLITSGW QGIVVANVDG KLLGCNAMAK RLLHRPRIGD
DIDRHLGASW NSGEQVCQDQ RLHLKTQQLV ETRPSQLVSQ QIGVRFRDPK LERAWQQANK
VVGRNIPLLI CGETGVGKEQ FVKKLHGQST RAQRPLVAVN CAALPAELVE SELFGYQAGA
FTGASRQGFE GKIRQADGGF LFLDEIGEMP LATQSRLLRV LQEREVVPVG GNRSYKVDIQ
VVAATHADLR QLVSEGAFRE DLYYRLNGLQ VSLPPLRQRA DIERIIHKLH RRYRQAPQQL
CPQLLRRLLA HDWPGNLREL DNLMQVACLM ADGDPELNWQ HLPDTLQAQL QGPEQAGEQM
AACESELSLM VNANIVSSFH RFEGNVSRCA KHLGISRNTL YRKLKALGLK P
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