Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3567 |
Symbol | |
ID | 4922640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4261676 |
End bp | 4262329 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640165189 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001095692 |
Protein GI | 127514495 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0246266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAGAAG CTAAAAGTCG TGTCGGCCGT CCCAGTGGCG ACACTCAAAA TCGCGATAAG CTGATCCTGG CGGCAAGAAA TCTGTTTATC GAACGTCCCT ATGCTCAGGT GTCGATCCGC GAGATCGCCA GCCTGGCGGG CACAGACCCC GGCCTGATCC GTTACTACTT CGGCTCCAAG GAGAAGTTGT TCTCCACCAT GATCCATGAG ACGGCGATGC CCGTGCTGGC CCAGCTGCAT AAGGCGAGAA GAGAGACGCG CCAGGAGAGC CCGGCGGCCT TGCTACAGAC CTACTACAGC GTCATGAGCA AGCATCCGCA CTTTCCCAGA CTCATGCTGC GCATCGCCGG ACTGGATCAG AGCCTGCCGG AAAATGCCGA GGTGACCAAG GCCTTCTATG AGGTGGTTAA CTTCGAGAAT ATCGCCATAT TTCAACGATT AAAGGATAAG AATCTGCTGA AGGACGATGT GGACGCCCAC TGCGCTCAGC TGAGCTTCTT CGCCATGATG GTGTTTCCCT TTATCGTGCC GGAAAACTTA CTCGAAAGGG TCGGCATAGA ACTTACGCCG GACTTTCTAC AACTACTTGC CGAGCAAAAT ACCCGTCTAC TGCAGCGTGG TCTGATGGAC GTGAAGGATG AGAGAGATGA ATAA
|
Protein sequence | MAEAKSRVGR PSGDTQNRDK LILAARNLFI ERPYAQVSIR EIASLAGTDP GLIRYYFGSK EKLFSTMIHE TAMPVLAQLH KARRETRQES PAALLQTYYS VMSKHPHFPR LMLRIAGLDQ SLPENAEVTK AFYEVVNFEN IAIFQRLKDK NLLKDDVDAH CAQLSFFAMM VFPFIVPENL LERVGIELTP DFLQLLAEQN TRLLQRGLMD VKDERDE
|
| |