| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3566 |
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| Symbol | |
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| ID | 4922701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4260376 |
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| End bp | 4261683 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640165188 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001095691 |
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| Protein GI | 127514494 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.338138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACA AGAAACGCTA TCTATTAGTC GGTGTGGGCG TCGGCGTGCT GGCCATAGTG
CTGGCGGCGC TGCTAAAACC TTCGCCCTCA CTGGTGGCCG GATACGATAA GGCCAGGGCG
GTCGAGGTGA TGCCGCTAGC TCAGCAACCC ATAGCACCCA GAGTCATCGG CTTCGGCCGG
GTCGAACCCA AGCATGTGTG GCAGGCGGTG GCCGAGGTGG GCGGCAAGGT GTTGTATCGC
CATCCCCAGC TGGAAACCGG CCGCATGCTG CCCAAGGGCA CACTGGTGCT CGAGATAGAT
CCGCTGGAAT ACCAGCTAAA GGTCGCCCAG GCACAGGCCA GCATGCATGC CACCCAGGCG
CAGCTGACCC GTCTGGATCA GCAGGAGAAG AACCTCAATA CCAGCCTGAA GATCGAGGAG
CAGAAGCTGG TGCTGGCCGA GCAGGAGTAT CAACGCAAGC TGACCCTGAA GAAGCGCAAC
CTGGTATCGA GCTCTGAGCT GGAGAATCAG AAGCAGTCGC TGCTGGCCCA GACCAAGCTG
GTGGAAGATC TACAGAGTTC CCTCAAGTTG CTCCCCGACG ATCGCAAGGT GAGCGAGGCG
CAGCTGAGCG TCGACAAGGC CTCCTTGCAG GACGCCGAGC GCCGCCTTAA CCAGACCAAG
GTGGTGCTGC CCTTCGATGT GCGGGTGTCG GACATCAATA TCGAGCAAGA TCAGGTGGTG
GCTGCTGGCG CCGTGATGCT GGTGGCCCAC AGGCTAGGCA CAGCCGAGAT CAAGGCGGAG
TTATCCTTGC AGGATATGCG CGCCTTGGTA AGCAGCCTGG TGCAGGCATC AAAGCCCAGA
AGCATGCCCT CTATCGACGA GTTTGAGTTG CAGGCGGAGG TAAGTTTTCA GGCTGGCAAT
CATAGCTTTA GCTGGCCGGC GCGGGTGACC CGGGTCGCCG AGACGGTCAA CCCCAACCAG
GCCACTATAG GTGTCTACTT AGAGGTGGAG CAGGACTTCA GCCAGATGGA TCTGCTGCTG
CGTCCGCCGC TGACCAAGGG GATGTTTGTC AGCGCGGTGA TCAGCGGCAA ACCGAGGGAA
CATTTCGTGA TCCCCGAGCG GGCGCTGCGG GGCGATCAGA TCTATCTGAT GGATGCCCAG
CAGAAGCTGG TGATCAAACC GGTCGAGATG CTGTTCCGCC ACGAGCAGCA GGTGGCCGTC
GAGGGTGAGT TGAAGGCGGG TGAGGCCCTG GTGCTCAACG ACCTGATCCC GGCCATTCCC
GGTATGTCGC TCAAGCCTGT TGCCAATGAG GGAGGGGCGC CGCTGTGA
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| Protein sequence | MNNKKRYLLV GVGVGVLAIV LAALLKPSPS LVAGYDKARA VEVMPLAQQP IAPRVIGFGR
VEPKHVWQAV AEVGGKVLYR HPQLETGRML PKGTLVLEID PLEYQLKVAQ AQASMHATQA
QLTRLDQQEK NLNTSLKIEE QKLVLAEQEY QRKLTLKKRN LVSSSELENQ KQSLLAQTKL
VEDLQSSLKL LPDDRKVSEA QLSVDKASLQ DAERRLNQTK VVLPFDVRVS DINIEQDQVV
AAGAVMLVAH RLGTAEIKAE LSLQDMRALV SSLVQASKPR SMPSIDEFEL QAEVSFQAGN
HSFSWPARVT RVAETVNPNQ ATIGVYLEVE QDFSQMDLLL RPPLTKGMFV SAVISGKPRE
HFVIPERALR GDQIYLMDAQ QKLVIKPVEM LFRHEQQVAV EGELKAGEAL VLNDLIPAIP
GMSLKPVANE GGAPL
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