| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3550 |
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| Symbol | |
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| ID | 4922853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4237977 |
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| End bp | 4238753 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165172 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001095675 |
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| Protein GI | 127514478 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTA TCGACGAGTC CTGTAAATTT GATCCCGATG CCATAGAGAC CGAGGTGGTG
GGGATCGCCG CCCGCCTGGG ACAACACGAT TCGGGCATGC ACAGTCATGC CAAGGCGCAG
CTGCTCTATG CCCCTCAGGG TTGCATGACC ATCACACTGG ACGGATTACA CTGTGTGTTG
CCGCCCACCC GTGCCGCCTG GATCCCGCCG GCGTGCCGTC ACAGCGTGGT GATGAATCGG
GTGGTAGATT ACCGCTCCCT CTACTTTGCG CCGCAGTTGA CGGGGAGCAT TGCCAATCGC
ATTCAGATCC TCGAAGTGAC CCCCCTGTTG CAAGCGCTGG TGGAGCGTAT GGCCTTCTGG
CCTTGGGACA AATCGGCGAT GGCTATGGTG AATACCTATC AGCTGTTCTT CGAGGAGCTT
TCCCAGGCTA AGGAGAGTCA TCTGGTGTTG CCTATGCCAA GCGACAGACG CCTGCAAACC
TGGCTCGCCG AGCTTCAGCG TGCGCCATGG GATGTTCCGC CCCTCAAGCA GCTAGGGCAG
CAACTGGGTG CCAGCAGTAA GACCATCAGC CGCATCTTCA CCAGGCAGAC GGGAATGCCC
TATCAAAACT GGCGTCAGCA GTGGCGGCTG CAACAGGCGA TCGCCCTGCT CGCCAGCGGC
TATCAGGTGA ACGACGTCGC CTACCGTTTG GCCTTCTCTA GCGACAGCGC CTTTATCGCC
TTCTTCAAGC AACACACAGG CAGCACGCCG CTGCAGTATT TGCAGCCAAA ATACTGA
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| Protein sequence | MAFIDESCKF DPDAIETEVV GIAARLGQHD SGMHSHAKAQ LLYAPQGCMT ITLDGLHCVL
PPTRAAWIPP ACRHSVVMNR VVDYRSLYFA PQLTGSIANR IQILEVTPLL QALVERMAFW
PWDKSAMAMV NTYQLFFEEL SQAKESHLVL PMPSDRRLQT WLAELQRAPW DVPPLKQLGQ
QLGASSKTIS RIFTRQTGMP YQNWRQQWRL QQAIALLASG YQVNDVAYRL AFSSDSAFIA
FFKQHTGSTP LQYLQPKY
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