| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3535 |
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| Symbol | |
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| ID | 4922868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4224969 |
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| End bp | 4226558 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165157 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001095660 |
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| Protein GI | 127514463 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAGG TAAATTCGAA AAACAGAGGC CAAAAGCTCG CTTATCTTTT GAGTCTATTT
ATGGTGGCGA CCCCGCAGTT GGGTCATACC CAGGCGCTTG AGGCCAAGGC AAGCCAGGGC
CATGAAGCCC ATGTGCATCA GGCCGGGGAG AAGACCTATG CCTGCCCAAT GCACCCTGAG
GAGACCAGCC ATGAGCCGGG CAGTCGTTGC CCCAAGTGCA ACATGTTCCT GGTCGAGCAG
GAAACCGATG CAAGCGAGAC AAGTTTAACG GCAGGCCATG AGGTGACCTA CGTCTGCCCC
ATGCACCCTG AGGTGACCAG CCATGAGCCC GGCAGCCGTT GCCCTAAGTG CAACATGTTC
CTGGTGGCCG AAGAGGAAGA GGAGTCGACC AGTACTAAGG TTGAGCCCGA GATGGATCAC
AGCCAACACG ATCCCCTGGC CCAGGCCAAG CCCGCGCCGC TCAACGGCGA GCCGTCGATC
AAATATGTCT GCCCCATGCA CGCCCATATT GTCAGCGATG TGCCCGGTAC CTGTCCTATC
TGCGGCATGA ACCTGGAAAA GGTGGAGATG TCGGCAGATA CCCAACAGAT AGAGATAGAT
GTCTCCGGCA GCATGCAGCA AGCCCTGGCA CTTAAGGTCG CCAAGGCGGA GAAAGATACC
CTATGGAAGT TTGTCCAGAC CGTAGGCCAG ATAGGTTATG ACGAGAGTCA GATCAACCAT
GTGCACGCCA GGGTCAACGG CTGGATAGAG AAGCTGGCCA TCACCTCAGT GGGTGACAAG
ATCTCCAAGG GGCAGCTCTT GTATGAGATC TACTCGCCGG ATCTGATCAA CGCCCAGGAC
GATTACCTGC TGGCGCTGAG CAGCCTGCAG AGCTCTAAGG ATAGCCGCAA CTACCAGGAT
CTGGTGCGCA AGGCGGGACT GCGCCTCGAG CTGCTGGGGA TGAATCAGGC CCAGATCAAA
CAGCTGGCCA AGAGCAAGCA GACCCAGTAC CGGGTGCCTT TCTATGCCAA GGCCGATGGT
ATCGTTAAGG CGCTGTCGGT GCGTGACGGC ATGTATATTC AACCCGCCAC AGAGGTGATG
TCTGTGGTGG ATCTCTCTAA GGTGTGGGTG ATCGCCGACG TGTTCGAGAA TGAACAGAGC
TGGCTGGCGA TAGGCCAACC CACAGAAGTT TCAGTGCCCG CCATGGACCT TAAGGGGATC
GAGGGTAAGA TCGATTACAT CTATCCCGAG CTGGATCCCG TGACCCGTAG CCTGAGGGTG
CGTATCGTGC TGGCCAACAA TGAGGTGGCA CTGCGCCCCA ATACCCTGGC CAAGATAGAG
ATCTACGGCG GCCCGAATGA GGATGTGCTG GTGATCCCGC AGGAAGCCCT GATCCAGACG
GGTAAAGAGA ACCGTGTCAT CGTCAAGCAG GGTGACGGCA GCTTCCTGGC CCGCAAGGTC
ACCGTCGGCA TGATGTCTCA GGGCAAGGCG GAGATCTTAA GCGGCATCGA GGAAGGCGAA
CAGGTGGTGA CCTCGGGTCA GTTCCTACTC GATTCAGAGG CGAGCCTGAA GGGCAGCCTG
ATGCGTCTTA GCAGCGGTCA TCAGCACTAG
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| Protein sequence | MSQVNSKNRG QKLAYLLSLF MVATPQLGHT QALEAKASQG HEAHVHQAGE KTYACPMHPE
ETSHEPGSRC PKCNMFLVEQ ETDASETSLT AGHEVTYVCP MHPEVTSHEP GSRCPKCNMF
LVAEEEEEST STKVEPEMDH SQHDPLAQAK PAPLNGEPSI KYVCPMHAHI VSDVPGTCPI
CGMNLEKVEM SADTQQIEID VSGSMQQALA LKVAKAEKDT LWKFVQTVGQ IGYDESQINH
VHARVNGWIE KLAITSVGDK ISKGQLLYEI YSPDLINAQD DYLLALSSLQ SSKDSRNYQD
LVRKAGLRLE LLGMNQAQIK QLAKSKQTQY RVPFYAKADG IVKALSVRDG MYIQPATEVM
SVVDLSKVWV IADVFENEQS WLAIGQPTEV SVPAMDLKGI EGKIDYIYPE LDPVTRSLRV
RIVLANNEVA LRPNTLAKIE IYGGPNEDVL VIPQEALIQT GKENRVIVKQ GDGSFLARKV
TVGMMSQGKA EILSGIEEGE QVVTSGQFLL DSEASLKGSL MRLSSGHQH
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