| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3433 |
|---|
| Symbol | |
|---|
| ID | 4923513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4099608 |
|---|
| End bp | 4100459 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640165045 |
|---|
| Product | regulatory protein AmpE |
|---|
| Protein accession | YP_001095558 |
|---|
| Protein GI | 127514361 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.483045 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.595075 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGT TTTCCTTATT GTTGGCGATC ATGATTGAGC GCCTCAAGCT ATTACCCCAG
GCATGGCAGC TAGAAACCCT ATTAGCCTTG TATGCCAAGA GTTTCTTTGG TCGCAAGCAG
CTAACCAATG ACCTTATGAT GGCGATTGCG TTGATTCTGC CAGCGATAGC TGTGCAGGTG
CTGGCCTGGT TCGTGGCCGG CATGTTTTGG GGGCTGTTGA GCCTTGGGCT CTGGGTTGGG
GTGTCGATTC TCTGTTTTAG TCATCTCAAA CAGCGTCAGG TCTTCAAACA GTATATACAG
GCAGCCTGCC GCGGCGATGC CCAGGCTTGT TACCATTTTG CCGATGAGCT CGATCCCTAT
GTGTCACTCA ATGCCGTTTC CGAGCAGGAT CTTGGCGAGA AGGTCGGGCA AACCGTTGCC
TGGCTTAACT ACCGTTTCTA TGGTGCCGTG GCCTTATACC TTATCTTCTT CGGACCGGCC
GGTGCCGTAC TTTATTGTAC CGTGCGTTAT TTCTCAGACG ATGCCAAGAG CCGAGGCGCG
GATCTTCCCT TAGTGGATAC CGCCTTGATG CTACTAGATT GGCTGCCGAG CCGCTTGATC
GCGCTGGGTT ACGTACTCAG TGGCCACTTT TCGCTGGCAT TTAGCCGTTG GCGGCAGCAG
GCACTATGCT GGCGCTGTCC TGCGCGAGAT GTGATTTCCG AGGTTGCCTT GGCGGCAGAG
ACAGTTGAAT TTAATTCACC TACACCAATT TGCGTCCAAT CGACCATCTC TTTGCTACAG
TTGAGTAAGC GAAACTTTAT CTTACTCGTG ATCGGTCTCT CTTTGCTGAC GATCTTCGGG
GTGGTAGTGT AG
|
|---|
| Protein sequence | MALFSLLLAI MIERLKLLPQ AWQLETLLAL YAKSFFGRKQ LTNDLMMAIA LILPAIAVQV
LAWFVAGMFW GLLSLGLWVG VSILCFSHLK QRQVFKQYIQ AACRGDAQAC YHFADELDPY
VSLNAVSEQD LGEKVGQTVA WLNYRFYGAV ALYLIFFGPA GAVLYCTVRY FSDDAKSRGA
DLPLVDTALM LLDWLPSRLI ALGYVLSGHF SLAFSRWRQQ ALCWRCPARD VISEVALAAE
TVEFNSPTPI CVQSTISLLQ LSKRNFILLV IGLSLLTIFG VVV
|
|---|
| |