| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3400 |
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| Symbol | |
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| ID | 4923703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4048986 |
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| End bp | 4050872 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165012 |
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| Product | nitrous-oxide reductase |
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| Protein accession | YP_001095525 |
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| Protein GI | 127514328 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4263] Nitrous oxide reductase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00206231 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGATA AGAATAACAA ACCAGCCAAC CAGTTGGAGA ACGCTGGTCG ACGCGAGTTT
ATGGGCAAGA CGGCCCTGCT GGGGGCGGGT GCAGTGGCCG CCCCCATGAG CGCCGCCATG
TTCGCCTCGA TGGCCAAGGC CCAGGCGGCC GAGGCCAGTA ACAGCCCAGT GGTTCATCCA
GGGGAGCTGG ACGAATACTA TGGTTTCTGG AGCGGTGGAC ACTCTGGCGA AGTCCGTATC
ATGGGCCTGC CCTCGATGCG AGAGCTGATG CGTATCCCGG TATTCAACAT CGACAGCGCC
ACCGGCTGGG GCATCACCAA CGAGAGTAAG GCGGTCAAGG GCGAAAGCGC CCACCTGATG
GCTGGCGACG CCCACCACCC ACACATGAGC ATGCAGGACG GCCGCTACGA CGGTAAATAT
CTCTTCATCA ACGACAAGGC CAACACCCGC GTGGCCCGTA TCCGTTGTGA CGTGATGAAG
ACAGATAAGA TGATCACCAT CCCCAACGCC CAGGCCATCC ACGGCCTGCG GGTACAGAAG
GTGCCTTACA CTAAATATGT CATCTGTAAC GGCGAATTCG AGGTCCCGCT GAACAACAAT
GGTAAGGAGA CGCTGGAAGA TGTCAGCACC TATCGCTCCC TGTTCAACGT GATCGATGCC
GAGAAGATGG AGGTCGCCTT CCAGGTGATG GTAGACGGTA ACCTGGATAA CACAGATGCC
GACTACGACG GCAAGTACTT CGCCTCTACC TGCTACAACT CAGAGATGGG GATGAATCTC
AGCGAGATGA TCACCGCCGA GCGCGACCAT GTGGTGATCT TCAACCTGGC CCGCTGTGAG
GCCGCGGTCA AGGCCGGTAA GTTTAAGACC TACAATGGCA ACAAGATCCC CGTGCTGGAT
GGTCGCAAGG GCTCAGATCT CACCCGTTAT ATTCCCGTTC CTAAGTCGCC ACACGGCCTG
AACACCTCGC CAAGCGGCAA GTACTTCGTC GCCAACGGCA AGCTATCACC GACCGTCTCT
ATCATCTCTA TCGAAAAACT GGACGACCTG TTCGACGACA AGATCAAGCC AAGAGACGCC
ATCGTCGGTG AGCCAGAGCT GGGCCTTGGC CCGCTACACA CTGCGTTTGA CAACAAGGGC
TACGCCTACA CCACCCTCTT CCTCGACAGC CAGATCGCCA AGTGGAACGT GGAAGAGGCG
ATTCAGGCCT ACCAGGGCAA GAAGGTCAAC TACCTGCGCC AGAAGCTGGA CGTACACTAT
CAACCGGGCC ACAACCACAC CTCTCAGGGC GAAACTCGCG ATGCCGATGG CAAGTGGTTG
GTGTCTCTGT GTAAGTTCTC CAAGGACAGA TTCCTGCCCG TTGGCCCGTT GCGCCCAGAG
AACGATCAGC TGATCGACAT CTCAGGCGAT GAGATGAAGC TGGTGCACGA CGGCCCAACC
TTCGCCGAGC CTCACGACTG CATCATAGTG CACCGTAGCA AGCTCAAGCC GAAGAAGCTG
TGGACCCGAG ACGATCCGCT GTTTGCCGAT ACTGTGGCCA TGGCCGAGAA AGATGGCGTG
CGCCTGATGA TGGACAACAA GGTGATCCGC GACGGCAACA AGGTCCGTGT CTACATGACC
TCGGTCGCGC CCAACTACGG CATGAGCGAG TTTAAAGTCA AGCTGGGCGA CGAGGTTACC
GTAGTGGTCA CCAACCTGGA TCAGGTGGAA GACGTGACCC ACGGCTTCTG TATGACCAAC
CATGGCGTAC AGATGGAGAT TGGCCCACAG GCCACGGCAT CTGTCACCTT CATCGCCGAC
AAGCCTGGGG TACAGTGGTA CTACTGCAAC TGGTTCTGTC ACGCCCTGCA CATGGAGATG
CGTGGCCGCA TGTTGGTAGA AGCCTAA
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| Protein sequence | MQDKNNKPAN QLENAGRREF MGKTALLGAG AVAAPMSAAM FASMAKAQAA EASNSPVVHP
GELDEYYGFW SGGHSGEVRI MGLPSMRELM RIPVFNIDSA TGWGITNESK AVKGESAHLM
AGDAHHPHMS MQDGRYDGKY LFINDKANTR VARIRCDVMK TDKMITIPNA QAIHGLRVQK
VPYTKYVICN GEFEVPLNNN GKETLEDVST YRSLFNVIDA EKMEVAFQVM VDGNLDNTDA
DYDGKYFAST CYNSEMGMNL SEMITAERDH VVIFNLARCE AAVKAGKFKT YNGNKIPVLD
GRKGSDLTRY IPVPKSPHGL NTSPSGKYFV ANGKLSPTVS IISIEKLDDL FDDKIKPRDA
IVGEPELGLG PLHTAFDNKG YAYTTLFLDS QIAKWNVEEA IQAYQGKKVN YLRQKLDVHY
QPGHNHTSQG ETRDADGKWL VSLCKFSKDR FLPVGPLRPE NDQLIDISGD EMKLVHDGPT
FAEPHDCIIV HRSKLKPKKL WTRDDPLFAD TVAMAEKDGV RLMMDNKVIR DGNKVRVYMT
SVAPNYGMSE FKVKLGDEVT VVVTNLDQVE DVTHGFCMTN HGVQMEIGPQ ATASVTFIAD
KPGVQWYYCN WFCHALHMEM RGRMLVEA
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