| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3380 |
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| Symbol | |
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| ID | 4923920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4027960 |
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| End bp | 4028769 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164992 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_001095505 |
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| Protein GI | 127514308 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCT ACATAGACAT AGCTGTCAAC CTGGTTGGCA GCCCGTTAGA ACAAGAATGT
GACACGCTAA TCAGTGATGC GGCGGCCCAT GGGGTTTCGC CGCTCATTGT TATTGGCTCC
AGCCTAGACG AGAGTCAGCA GGCGATCGCC TGCATCGCCC GTTATCCAAA CGCCCTCTAC
ACCACGGCGG GAGTGCACCC GCACCATGCC AGCGAGTGGG ACGCCACTAG CCGTGATCGA
CTCATACAGC TGGCTAGGCA GCCAGGCGTT GTGGCCATCG GCGAATGTGG CCTGGACTAT
AACCGTGATT TCTCGCCCCG ACCGAAACAG CGCGAGGCCT TCGAGGCCCA GCTGGCCCTG
GCCGTCGAGC TGGAGATGCC TGTGCTGATG CATGAGCGCG ATGCCCATGA GGACTTTGCC
GCCATACTGC AGCGCTATCG CCCGCATCTG AAGGGTGCTC TACTGCACTG CTTTACCGGC
AACCGCGCCA GCCTGGAGCG CTACATAGAG TTAGATTTGC ACTTAGGGAT CACCGGCTGG
GTGTGCGACG AGCGCCGTGG CCAAGAGCTG GCCGAGTTGG TGGTCGACAT TCCCGCCGAG
CGCATCATGA TAGAAACCGA CAGTCCCTAT CTGCTGCCTC GCAGCATGCG ACCCAAGCCG
AAATCGAGCA AGAACAAGCC GCAATACCTG CCCTACATCA GCCGGGTCAT CGCCCAGCTC
AGGGGCGAAA CTGAGGAGGC CTTTGCCCGT CAGGCCTATC ACAACAGCTG CGCCTTCTTC
GGCCTAGAAG CGGACTATGA GCCCCTTTAA
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| Protein sequence | MPSYIDIAVN LVGSPLEQEC DTLISDAAAH GVSPLIVIGS SLDESQQAIA CIARYPNALY
TTAGVHPHHA SEWDATSRDR LIQLARQPGV VAIGECGLDY NRDFSPRPKQ REAFEAQLAL
AVELEMPVLM HERDAHEDFA AILQRYRPHL KGALLHCFTG NRASLERYIE LDLHLGITGW
VCDERRGQEL AELVVDIPAE RIMIETDSPY LLPRSMRPKP KSSKNKPQYL PYISRVIAQL
RGETEEAFAR QAYHNSCAFF GLEADYEPL
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